Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0894 ATGACTCAAGTTCATACCTTCATCCCTCGATTGCTAATGGAAGAAGAACCAAAATCACCCCTACAGCCTCCAACTTATGGAAACCTAATCACCATTCTCAGCATCGATGGAGGTGGAATAAGAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTCGAGTCTGAGCTTCAGAAGCTGGATGGTGAAGACGCAAGAATTTCAGATTATTTTGATGTGATTGCAGGAACAAGCACCGGTGGCCTCGTGACTGCCATGCTAACCACTCCCAATGAAAACACTGGCCGACCCTTGTTTTCCGCCAAAGATATCAAGGACTTCTACCTTGAGCACTGCCCTATGATCTTCCCACAGCACAGTTATGTTCCAATTCCTTATGTCACGAAGGCAGTTACATCCTTATCAGGACCAAAATATGATGGGAAGTATCTGCATAACCTTGTTAAAGAAAAACTAGGAGAAACACAATTACACCAGACCCTTACTAATGTTGTTATCCCAACATTTGACATCAAGTGCCTTCAGCCAACAATATTTTCCACTTATCAGGTGAAGAGCAGGCCAAGTTTAGATGCCTTACTGTCAGATATATGTATTGGAACCTCAGCAGCACCCACTTATCTTCCAGCTCATTATTTCGAAACCAAAGACCCTACCGGGAGAGTTAGAGAATTCAACCTCATTGATGGTGGTGTCGCTGCAAATAATCCGGCTTTGGTTGCTATTGGGGAAGTGACCCAGGAGATCATCCGGGGTAGTCCTGATTTCTTTCCTATAAAGCCAATGGACTATGGCCGGTTTTTAGTAATATCCTTGGGAACTGGGTCATCAAAAGCCGAAGAAAAATACAATGCGGATCAAGCAGCCGAGTGGGGTCTGTTGGGATGGTTGACCAGTGGTGGTTCCACCCCCTTAGTGGATGTGTTTACCCAAGCAAGTGGAGATATGGTCGACTTACACCTTTCACAGGTTTTTCAAGCCCTTCACTCTGAAAAAAGCTATCTTCGGATACAGGATGATACATTGAGTGGTATAACTTCATCAGTCGACATAGCCACAAAGGAAAATTTGGATGATCTTGTGAAAATTGGTGAGGAGTTGTTAAAGAAAAGGGTCTCAAGGGTTAACCTGGATACAGGTGTCTTTGAGCCTTCAAATCATGAGACCAATGAGGAGGCTCTCACAAGTTTTGCAAGACTACTTTCCCAAGAGAAGCAACGTAGAGATGCTAGGTCACCACATGGACATGCTGCCGCTTCTAAAGGAGTGGTCGTTGTCTGA 1278 0.4476 MTQVHTFIPRLLMEEEPKSPLQPPTYGNLITILSIDGGGIRGLIPGTVLGFLESELQKLDGEDARISDYFDVIAGTSTGGLVTAMLTTPNENTGRPLFSAKDIKDFYLEHCPMIFPQHSYVPIPYVTKAVTSLSGPKYDGKYLHNLVKEKLGETQLHQTLTNVVIPTFDIKCLQPTIFSTYQVKSRPSLDALLSDICIGTSAAPTYLPAHYFETKDPTGRVREFNLIDGGVAANNPALVAIGEVTQEIIRGSPDFFPIKPMDYGRFLVISLGTGSSKAEEKYNADQAAEWGLLGWLTSGGSTPLVDVFTQASGDMVDLHLSQVFQALHSEKSYLRIQDDTLSGITSSVDIATKENLDDLVKIGEELLKKRVSRVNLDTGVFEPSNHETNEEALTSFARLLSQEKQRRDARSPHGHAAASKGVVVV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0894 425 PANTHER XYLOSE ISOMERASE 21 409 - -
Vvi18g0894 425 Gene3D Cytosolic phospholipase A2 catalytic domain 22 412 - -
Vvi18g0894 425 FunFam Patatin 22 412 - -
Vvi18g0894 425 SUPERFAMILY FabD/lysophospholipase-like 29 379 IPR016035 -
Vvi18g0894 425 Pfam Patatin-like phospholipase 33 241 IPR002641 GO:0006629
Vvi18g0894 425 CDD Pat17_isozyme_like 27 379 - -
Vvi18g0894 425 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 33 241 IPR002641 GO:0006629
Vvi18g0894 425 MobiDBLite consensus disorder prediction 403 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0894 Vvi-Chr18 9102088 9104115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0894 12 416 Miscellaneous Gene Families AT2G26560 69.877 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0894 - - vvi:100241962 844.343