Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0892 ATGGAAAGGCTGCAGCGAATGTTTGCCGGTGCAGGAGGGGCATTGGGGCACCCTCCGCCGGATTCGCCGACTCTGGACTCGTCGGAGCAGGTTTACATTTCCTCTCTCGCTCTCCTCAAAATGCTCAAACACGGGAGAGCTGGAGTTCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTCGTTGATGAGTACACAGTTCGTGTAGTAGATGTGTTCGCGATGCCGCAGAGTGGTACTGGCGTTAGTGTCGAGGCCGTTGATCATGTTTTCCAGACTAATATGCTTGATATGCTCAAACAAACTGGAAGACCTGAGATGGTGGTAGGATGGTACCATTCACATCCTGGATTTGGCTGCTGGCTCTCTGGTGTGGACATTAACACACAACAGAGTTTTGAAGCTCTGAATCAGCGAGCTGTGGCAGTAGTGGTGGATCCAATTCAGAGTGTTAAGGGGAAGGTTGTGATTGATGCTTTCCGTTTGATAAATCCCCAAACCATGATGCTTGGCCAAGAGCCTCGACAGACAACATCAAATCTTGGGCATCTTAACAAACCATCCATTCAGGCTTTGATACACGGATTGAACAGGCACTATTACTCAATAGCTATTAATTACAGGAAGAATGAACTCGAGGAAAAGATGTTACTGAACCTACACAAGAAGAAATGGACAGATGGGCTTACACTTAAACGATTTGATACCCACTCCAAAACCAATGAGCAGACCGTTCAGGAGATGCTTAGTCTAGCTATCAAGTACAACAAGGCTGTACAGGAAGAGGATGAGTTGCCACCGGAAAAGCTGGCAATTGCAAATGTTGGAAGGCAAGATGCTAAGAAGCATCTTGAAGAACATGTCTCCAACTTGATGTCCTCAAACATTGTCCAAACTTTGGGAACCATGCTCGATACAGTTGTGTTCTAG 930 0.4688 MERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLKRFDTHSKTNEQTVQEMLSLAIKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVVF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0892 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 27 138 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi18g0892 309 CDD MPN_RPN11_CSN5 20 286 - -
Vvi18g0892 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 26 306 - -
Vvi18g0892 309 FunFam 26S proteasome non-ATPase regulatory subunit 20 234 - -
Vvi18g0892 309 SUPERFAMILY JAB1/MPN domain 31 168 - -
Vvi18g0892 309 Gene3D Cytidine Deaminase, domain 2 17 234 - -
Vvi18g0892 309 SMART pad1_6 30 165 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi18g0892 309 Pfam Maintenance of mitochondrial structure and function 173 295 IPR024969 -
Vvi18g0892 309 ProSiteProfiles MPN domain profile. 31 166 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0892 Vvi-Chr18 9086195 9091067 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0892 K03030 - vvi:100247098 605.134