Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0879 ATGTATGCGGTGGAGAGACTGAGTAGCTACATATCTCGGGGCGTCTACACCGTTTCTGGCCCTTTTCATCCATTTGGTGGGGCAGTGGACATTATCGTTGTTGAACAGCAAGATGGGAGTTTTAAGTCTTCGCCCTGGTATGTTCGATTTGGCAAATTTCAAGGGGTTTTGAAGACGAGGGAAAAGGTAGTTAACATAAGTGTTAATGGAGTCGAAGCCAATTTCCACATGTATTTGGATCATAAGGGGGAAGCCTTCTTTCTCAAGGAGGTGGATGTCGAAGAAGGGGAATCCATGTTGTACCCTTCCTCCCTATCTTCTGGGGATGAGAGGGATGAGGAATCCAATGATAGGAGGCCTATGAAGTCCAAAAGTTGCAATTTTGATGCAAATGGACAGAAGCCAGTTGCTCCTATTGATTTGAGCACTGGAAAGATTGTGCCTAGGACTACCTCCCGGCGGGGCCGATTTTTGGGGCTTGTTTTTGGACGAAAGTCAATGAAGCAGGAGAGTTTTAGGGAGAAGGAAAGTGGTGCTGACGTGACCAGGGTAAGTTCATTGGAGAGGGCGGAAATTGCGGCTAACCTCTTGGAGGTCAGGTGGACTACCAGTCTTGCCACCAAGAAGCCAAAGAAAGATAAAGCTTCACAAATTTCTGGTGAAGATAGGTTGGACACTGAGGCTGATAATGATGGAAAAAGCCAGACAGCCTTATGTGTGAATGAGGACACGGAAAATGGTTCAAACCCTTCCCAGTTACAGGAAGAAAATGGTTTCTGCGATGGGGAAATGAGCAACAATTCTCAATCTGGATTTCATAATTCAGAATGTTCTGTTGGGGAAACTGGTTTAGAAATGTCATGCTTAGGCACCCCTGTTGAAACATCTTCTTTAAATGAAACTGATTTGGGAGAAACACAGGAGCTTTCTGAAATATTAAGAGTGATTAATGAAGTCAGTGTAGGAGATGCTGATCATCATGATAATGTGAAAAGTGTCACCTCTAGCATCACCGGTTCTGAGTCACAAATTCCACAGACTGCGGAGCTTGAAGTCAGTCCTTGCAAGCAGTTCAATGAAGAAGAGGCATTTGATGAAAGGGATGCTGTTTTATCAGGTCATGATGTTTTGGAGGAGGAGAATGAACAGGACGGAGTTCAATCCTTTATATATTGTGAAACATCAGGTAGCTCAACAGTAGGGTTAGATGATTCTATCAAAGAAACCCAAGAGATTCTGTACCTTGCCTGTGGAGGAAGTGGGGAAGTTCATGTTCATGACAAAACTCTACATGAGACTTCTGAGCTAATATCTGAGGTATTAGAAATTATTCATCAGGATACAGTTACCGAGAGACTTGCTGAGGATATTAAGTCAGAAGCCAAAAAGGTTCCTGAAAATCATTCTCAACATGGTAGTCTATCTTATTCTTGCATGCCTGCCAATGGTGAGGCAGGTCTTGAAGAGCCACTCGTGATGCAGGAATCCTATACTGAAATGGTCAGAGTAGACAATTCAGTTGAAGAAACCATGTCACATGGCAGTTTCACCATTTCCAGTTTCAGTGATTCAGGTCATCAAGTCCAATGTAAGGAAAATATCAGGGATGAAAAAAAAAACAGTGAACTCCAACGTTCTTTGGAGTCTATTGGAGATTCTCAAGAGTTTGATGGTGATTATGTCCCAACAAAAGTGATAAGAATTTCGCCACCAGAGAGTTCAGATGACGAACAATTCCCTTTCAGTGACCTCGATGATTTCAAGCATTCTGAAGTTCGATCATTGGACTTGATTTCTCTGGATCCTGTGGAGAAAGAAAACTGTCCCTCACTTAAACTGGATAGCAATGAAGCAGTAGAAGATTTATTTGATGCAAATTATGTGTCATATTCATCTCCAGACAGCTCTGTTCAAGAGAATCCACCAAATGATTTGGACAACTTGATAGATAAGTCAAGGGTAGTATCAAGTTCTATTAGTATTCCTTCAAGTATCAAGGTCACTTGTGAGGAAGTTGAGCGGCTGGCCGAATCTTTACCTAATATGGGCCCTCTTGGTGATGATCTGGATGCACACAAACTTCATCATCCTATAAGCCTTTCTCTGGATTCAAATTCCAAATCCTTGGGATGGGCATTGCTTAGGAACAACATCTCAACCTTAACAAAGTTGAATGCAGACAATAAACACATATTAGTACAAGAACAGCCTTCACTTGAGGATACTCAAATTTCAAGGGAGCTCATAAATGTTCTTGCAGACCCTGCTGTTGAAATATCTCTTTGCAAACATTTGTTATATGAAGGGATGGGGGCTGCTGCTGCTTCTCAGGCCTTTGATGCTGAGAAATTGGATATGGATAAATTTGCCTCTCTGGGTCCTGATGTGTTGAAAAAAGATAACCTTGTCGTCAGAATTAGTGGCCATTACTTCCCATGGGATGCAGCTGCACCTATTGTTTTAGGAATGCTTTCATTGGGAAAGGAACAAATACTTGAATTGAAAGGCATGATAGCTGTTGACCAAGTTGAGAAAACTCTTGAAGGGGATCCAGCGAAAGCCATTGTTGCCTCTGGTGGAAGCTGGAGGCTTTGGCCTTTTAGAAGATCAAGAGCCATCTCATCTGTCCAGCCAGTTATCAATAACACCAGACAATCTGATGCTGAGAATGCTTCAGAGATGACTGCTGGCACAGATGGGAATGATAATGTGTGTAAACCCAAGCTGACAAAAAAGAAGGTACGAGTAATTACTCCAACGTCTGAACAGCTGGCATCCTTGAATCTGAAGGAAGGAAGGAATACGATAACCTTTACATTCTCAACTGCAATGCTGGGGGAGCAGCAGGTTGATGCCAGCATTTATTTGTGGAAATGGAACACTCGCATAGTAATCTCAGATGTTGATGGGACAATTACCAAGTCAGATGTTCTAGGGCAGTTCATGCCTATGGTTGGAGTAGATTGGTCACAGACAGGTGTAGCACATCTATTTTCTGCTATTAAGGAAAATGGATATCAATTGCTTTTCCTTAGTGCACGAGCAATTTCTCAGGCCTATCACACTAGGCAATTTTTATTCAATCTTAAGCAGGATGGAAAGGCTTTGCCAGATGGGCCAGTTGTTATTTCCCCTGATGGACTTTTTCCTTCTCTCTTTCGAGAAGTTATTAGAAGAGCTCCTCATGAATTCAAGATTGCTTGCTTGGAGGATATCAAGGCATTATTTCCTTCTGATTGCAATCCATTCTATGCTGGTTTTGGAAACCGGGACACTGATGAGTTTAGCTACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGGGCGAGGTTGCTGTGAACCGCCGTGTGGACACAAAATCATATACTTCTCTTCACACTCTTGTGAATGGCATGTTTCCATCCACATCCTCTTCTGAGCAGGAGGATTTTAATTCATGGAACTACTGGAGACTGCCACCTCCCATTGTTGATATTTGA 3495 0.4235 MYAVERLSSYISRGVYTVSGPFHPFGGAVDIIVVEQQDGSFKSSPWYVRFGKFQGVLKTREKVVNISVNGVEANFHMYLDHKGEAFFLKEVDVEEGESMLYPSSLSSGDERDEESNDRRPMKSKSCNFDANGQKPVAPIDLSTGKIVPRTTSRRGRFLGLVFGRKSMKQESFREKESGADVTRVSSLERAEIAANLLEVRWTTSLATKKPKKDKASQISGEDRLDTEADNDGKSQTALCVNEDTENGSNPSQLQEENGFCDGEMSNNSQSGFHNSECSVGETGLEMSCLGTPVETSSLNETDLGETQELSEILRVINEVSVGDADHHDNVKSVTSSITGSESQIPQTAELEVSPCKQFNEEEAFDERDAVLSGHDVLEEENEQDGVQSFIYCETSGSSTVGLDDSIKETQEILYLACGGSGEVHVHDKTLHETSELISEVLEIIHQDTVTERLAEDIKSEAKKVPENHSQHGSLSYSCMPANGEAGLEEPLVMQESYTEMVRVDNSVEETMSHGSFTISSFSDSGHQVQCKENIRDEKKNSELQRSLESIGDSQEFDGDYVPTKVIRISPPESSDDEQFPFSDLDDFKHSEVRSLDLISLDPVEKENCPSLKLDSNEAVEDLFDANYVSYSSPDSSVQENPPNDLDNLIDKSRVVSSSISIPSSIKVTCEEVERLAESLPNMGPLGDDLDAHKLHHPISLSLDSNSKSLGWALLRNNISTLTKLNADNKHILVQEQPSLEDTQISRELINVLADPAVEISLCKHLLYEGMGAAAASQAFDAEKLDMDKFASLGPDVLKKDNLVVRISGHYFPWDAAAPIVLGMLSLGKEQILELKGMIAVDQVEKTLEGDPAKAIVASGGSWRLWPFRRSRAISSVQPVINNTRQSDAENASEMTAGTDGNDNVCKPKLTKKKVRVITPTSEQLASLNLKEGRNTITFTFSTAMLGEQQVDASIYLWKWNTRIVISDVDGTITKSDVLGQFMPMVGVDWSQTGVAHLFSAIKENGYQLLFLSARAISQAYHTRQFLFNLKQDGKALPDGPVVISPDGLFPSLFREVIRRAPHEFKIACLEDIKALFPSDCNPFYAGFGNRDTDEFSYLKVGIPKGKIFIINPKGEVAVNRRVDTKSYTSLHTLVNGMFPSTSSSEQEDFNSWNYWRLPPPIVDI* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 100 145 - -
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 884 904 - -
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 884 899 - -
Vvi18g0879 1164 Pfam lipin, N-terminal conserved region 12 96 IPR007651 -
Vvi18g0879 1164 SUPERFAMILY HAD-like 955 1105 IPR036412 -
Vvi18g0879 1164 SMART lns2 963 1119 IPR031315 -
Vvi18g0879 1164 Pfam LNS2 (Lipin/Ned1/Smp2) 917 1139 IPR013209 -
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 206 230 - -
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 206 233 - -
Vvi18g0879 1164 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 757 830 IPR031703 -
Vvi18g0879 1164 PANTHER LIPIN 1 1163 IPR026058 -
Vvi18g0879 1164 MobiDBLite consensus disorder prediction 107 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0879 Vvi-Chr18 8993468 8999956 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0879 K15728 - vvi:100266011 2293.85