Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0878 ATGGCCATTAAGACGTATTATCGCTGCCTCTCAGGCAATGGAGAGCGTGAAATGACCATGCAGGAGTTCAAAAAGTGGCTAAAGAAATATGATGCTGACAAGGATGGGAGAATAAGCAAGGACGAACTCCGGGACGCGATTCGGGCCACTGGCGGGTGGTTCACCAGGTGGAAGAGCAGGAAAGGGGTGCGGTCCGCGGATGTGAATGGCGACGGCTTCATCGACGTCCACGAGATTGAAAACCTTGTGGAGTTTGCGAAGACGCATTTGCGTGTTAAGATCGTGGAATTCTAG 294 0.517 MAIKTYYRCLSGNGEREMTMQEFKKWLKKYDADKDGRISKDELRDAIRATGGWFTRWKSRKGVRSADVNGDGFIDVHEIENLVEFAKTHLRVKIVEF* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0878 97 Pfam EF hand 65 83 IPR002048 GO:0005509
Vvi18g0878 97 Pfam EF hand 22 49 IPR002048 GO:0005509
Vvi18g0878 97 CDD EFh 22 78 IPR002048 GO:0005509
Vvi18g0878 97 Gene3D - 5 89 - -
Vvi18g0878 97 SUPERFAMILY EF-hand 19 83 IPR011992 -
Vvi18g0878 97 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Vvi18g0878 97 ProSiteProfiles EF-hand calcium-binding domain profile. 18 53 IPR002048 GO:0005509
Vvi18g0878 97 ProSiteProfiles EF-hand calcium-binding domain profile. 64 89 IPR002048 GO:0005509
Vvi18g0878 97 PANTHER CALCIUM BINDING PROTEIN 19 80 - -
Vvi18g0878 97 SMART efh_1 22 50 IPR002048 GO:0005509
Vvi18g0878 97 ProSitePatterns EF-hand calcium-binding domain. 31 43 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0878 Vvi-Chr18 8989862 8990155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0878 18 84 EF-hand Containing Proteins AT5G42380 34.328 2.01e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0878 - - vvi:100260805 203.371