Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0861 ATGTTTTTAATTTTTTTTTCCTTCCAATTTGTTGTTCAGATCGAGCATCATCTCTCAAATAGTATGAGCTCGGCCTATACCATAGGTCACTATGTTCGTACTACTCTCCCTCGTATTGGACTCGAATTCATTCTTCCATCTATTCCAAATATCTCCGTCTTCCATTCTCTTTTTAAATCATGTAGTGAAACCAAAGATTCGAGATGGGCATTTATTACTTTTCGTCGATTGTTAGAGTCTAACGTGAAGCCAAGTGATCTTACCTTCTCTTTGCTCATCAAAGCTTATGTTGCCGATGCTTCTTCTTCAACTGTTATTGATTCACCAAATACAAAAATAGAAGCAAATCAGATTCAAACCCACCTCAGAAAATCTGGGTTTAATCAATATGTGTACTTGACCACTGCTTTTCTCGACTTCTATGGGAAATTGGGATGCATCTATTATGCCCAACATTTATTTGAAGAAATGCCCAGAAGAGATGTTGTATCTTGGAATGCGTTGATTTGTGGGTATTCTCGCAATGGATATGATTATGATGCGTTGGAAGTGTTTGTCCAAATGCTCAGAGAGGGCTTTCCTCCTTGTCAGAGAACGCTGGTTGGTTTAGTTCCGTCTTGTGGTCGGCCAGATATAATCTTTCAAGGGAAGGCTATTCATGGATTTGGAATTAAGTCTGGACTTGACTTGGATTGCCGAGTGAAGAATGCATTAACTTCGATGTACGCTAAATGTGCAGATTTGCAAGCGGCCGAAGTCTTGTTTGAAGAAATCTTTGAGAAAACTGAAGTTTCATGGAATACTATGATTGGTGCCTATGGCCAAAATGGGCTATTTGACGAGGCAATGCTTGTATTTAAACAAATGCAAAAGGAAAGGGTGGAAGTCAATTACGTTACAATCATAAGTCTTCTGTCAGCAAATGCTCATCTGGATTCTACTCACTGTTATGTAATTAAAACCGGATTTGCCACTGATGCTTCTGTCATCACTTCACTAGTGTGTTCCTATGCTGGGTGTGGGAATATTGAATCAGCGGGACTACTTTACAATTTAATGCCTCAAAGGAACTTGGTTTCCTTAACTGCAATGATTTCAGGCTACGCTGAGAAAGGCAATATGGGTTTGGTGGTGGAGTGTTTTACTCAAATGTTGCAGTTAAAAATGAAACCAGATGCGGTTGCTATGGTTAGCATTCTTCATGGGTTCACAGACCCTACTTTCATTGGGTCTGGGCTAGGGATCCATGCTTATGGATTGAAGACTGGCTTGTGTGCTGATTGTTTAGTGGTGAATGGGCTGATTAGCATGTACTCAAAGTTTGGTGACATAGAAACAGTATTCTCTTTATTTTCTGAGATGGGTGAAAAACAACTAATCAGTTGGAATTCAGTGATTTCGGCCTGCATACAGGTTGGAAGAACAAGTGATGCTATGGAGTTGTTCTGCCAGATGAGGATGTATGGACACAGTCCTGATGCCATTACTATTGCTAGTTTATTAGCAGGGTGTTCTGAAGTTGGTTTTCTGCAGTTTGGGGAGAGGCTCCATAACTATGTTCTCAGAAACAATCTTGACATGGAAGATTTTCTGGAAACTGCTCTTGTAGACATGTATATCAAGTGTGGAAGGTTAGAGAGTGCAGAGAGGGTGTTTAAGAGCATTAAAGAGCCGTGTTTGGCAACATGGAACACAATGATTTCAGGCTATGGATTATCTGGGCATGAACATAGAGCTCTCAGTTGTTACTCTGAAATGCAAGAACAAGGACTAAAACCTGACAGAATCACTTTTTTGGGAGTATTATCTGCTTGTACCCATGGGGGGCTTGTTTGGGAGGGAAAACGATACTTTCGAAGTATGAGGGAAGACTTTGGTATGATTCCAGGATTGCAACACAATGCATGCATGGTTGATCTCCTCAGTCGAGCAGGATTTTTAGAGGAAGCAGTAATATTTGTCAAGAATATGGAGGTTGAGCCTGATTCTGCCATATGGGGAGCTTTGCTTACCTCTTGTTGCATCCACCAAGAGCTGAAGCTTGGGGAGTGTTTGGCCAAAAGGTTACTCCTATTGGATTATTACAGTGGTGGATTATATGTGTTGATGTCAAATCTTTATGCAAGTAAAGGAAGGTGGGATGATGTAGCAAGGGTGAGGAAAATGATGAAAGATACTGGCGGAGATGGATCTTCTGGAATTAGCCTAATTGAGGTTTCTTCCTTGGAGAAAATGAATAACAGCTTGTGCTTGAGCGACTTGAGTTTGAATACAAATTATTGGCAGCTTTCTTCTCCACATTGA 2304 0.4062 MFLIFFSFQFVVQIEHHLSNSMSSAYTIGHYVRTTLPRIGLEFILPSIPNISVFHSLFKSCSETKDSRWAFITFRRLLESNVKPSDLTFSLLIKAYVADASSSTVIDSPNTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMPRRDVVSWNALICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDSTHCYVIKTGFATDASVITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFGMIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGECLAKRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEVSSLEKMNNSLCLSDLSLNTNYWQLSSPH* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0861 767 FunFam Pentatricopeptide repeat-containing protein At4g20770 113 213 - -
Vvi18g0861 767 FunFam Pentatricopeptide repeat-containing protein 409 555 - -
Vvi18g0861 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Vvi18g0861 767 Gene3D Tetratricopeptide repeat domain 221 312 IPR011990 GO:0005515
Vvi18g0861 767 Gene3D Tetratricopeptide repeat domain 313 406 IPR011990 GO:0005515
Vvi18g0861 767 FunFam Pentatricopeptide repeat-containing protein 557 751 - -
Vvi18g0861 767 Gene3D Tetratricopeptide repeat domain 50 220 IPR011990 GO:0005515
Vvi18g0861 767 Gene3D Tetratricopeptide repeat domain 533 751 IPR011990 GO:0005515
Vvi18g0861 767 FunFam Pentatricopeptide repeat-containing protein At3g13880 217 313 - -
Vvi18g0861 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Vvi18g0861 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Vvi18g0861 767 Gene3D Tetratricopeptide repeat domain 408 529 IPR011990 GO:0005515
Vvi18g0861 767 Pfam E motif 676 738 IPR046848 -
Vvi18g0861 767 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 313 740 IPR046960 GO:0003723|GO:0009451
Vvi18g0861 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 533 557 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 432 457 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 135 161 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 359 386 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 264 293 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat 163 193 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat family 460 504 IPR002885 -
Vvi18g0861 767 Pfam PPR repeat family 558 605 IPR002885 -
Vvi18g0861 767 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vvi18g0861 767 Pfam Pentatricopeptide repeat domain 49 97 IPR002885 -
Vvi18g0861 767 NCBIfam pentatricopeptide repeat 264 297 IPR002885 -
Vvi18g0861 767 NCBIfam pentatricopeptide repeat 562 594 IPR002885 -
Vvi18g0861 767 NCBIfam pentatricopeptide repeat 359 393 IPR002885 -
Vvi18g0861 767 NCBIfam pentatricopeptide repeat 163 195 IPR002885 -
Vvi18g0861 767 NCBIfam pentatricopeptide repeat 460 494 IPR002885 -
Vvi18g0861 767 FunFam Pentatricopeptide repeat (PPR-like) superfamily protein 314 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0861 Vvi-Chr18 8856464 8859548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0861 53 739 Glycoside Hydrolase AT3G49170 30.312 8.40e-102 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0861 - - vvi:100250665 1495.72