Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0821 ATGTTGGGATGGAAGCATATCACGGTGGCTGTGGTGGCGGCCGGAATACTGACTGTGCTTCTGATCGTGTTATTTTGGCGATGGTGTTGTAGTAAAGGACATAAGGATTTTGTTGATGCTTCCAGGACTAAACATCAGAGCTTGCAAGCTGGGATTGCGAAACTCCACCATGTTAGCCTTCCTCCATATCACCATGATCTAGACAGCAAGAGAAAGGCGAATTACTATGTTTTTCGACGTGGGGTTTCATCCAGACCTTTGTTTAATTGGGCGCATCATCCATCGCTCGTCACGGATGCGGTTGAAAATGGGTGGTCTCGATTCGGTTTCACGAGCTACATGTCGTCTCCCTCGACGCGATCATCGCTGTTGGGATTATGCGCAGTGGGGGAACATGGGAAAGAAACGGGGGCGGAGATTAGCTGGGAAGTGTCTCAGGGATCGGCTGATTTCATGCAGAAGATCAGATTGAATTCTGGGTTAAAGAAGATGAATATGAGCAGTCCTTCCATGGCTGCTGCATCTGTAATTAGAACAGCTTTGCCACTGCCAGGCCCTCCCTTGGGGAATTCCTCGTTCCCGCAAGAAGCCTACTTCGAAATCACAATATTGTTTTCAGGTGAAGGTGATCCTGAGTCTGTTGGCCGGGTTAAGGAAGGTGAGAGAACGAAGCTCATCCATGAGAATTCCAATGCTAAAGCCAATTCAGAATCTATAATCCATCTTGAAGAAATGAAACTCGGCTCTAAGGACGACGGCAAAGGTGAAGTCGTAATGCTATCTGTGGGGCTCACCGCCGGAGGCTCTCTTCCTTTGAAACTTCCTGGCAGCTACCCGGGATCAATTGGATTTAACTCCAATGGCTCTGTCTATCTTGACGGAATTAAACTTGTATTCGAATCGGAGAAGGAAGAATGGGAAAGGGCAGACAAGGTTATTGGTTGCGGATTTGATCCTAGCCAGAAGAAGGTGTTCTTCACAATAGATTCAGAACTAGTTCATGTAGTCCATTGCAAGTCAGAGGAATTTGGGAGTCCCCTTTATCCAACCCTCGGAGCAAACACAGACGTGGAAGTTCTGGTTAATTTTGGACAAAGTATGTTCAGCTACGCACCCGCCAATGCACAAAGAACTCCGAACCCTTGCTTTATCGGTCCCCTTGTGAATTCCCCCGCTGCTGCTCTGGGGTATGAAGACAGCAGGGAGCTTTTCTCAATGGGGAGAATAGACTCCCAGTGGCTCAACAGATGCACAACCAAAAGCAGCCACAACAATGGCAGTAAAGCATTAGATTTCGATGAGGATTCTGAAGCTGATTTATTTGAAATAGTCTTGGACAGAAGCGGCCGATCACCACACGCAGTATTGTAG 1371 0.4748 MLGWKHITVAVVAAGILTVLLIVLFWRWCCSKGHKDFVDASRTKHQSLQAGIAKLHHVSLPPYHHDLDSKRKANYYVFRRGVSSRPLFNWAHHPSLVTDAVENGWSRFGFTSYMSSPSTRSSLLGLCAVGEHGKETGAEISWEVSQGSADFMQKIRLNSGLKKMNMSSPSMAAASVIRTALPLPGPPLGNSSFPQEAYFEITILFSGEGDPESVGRVKEGERTKLIHENSNAKANSESIIHLEEMKLGSKDDGKGEVVMLSVGLTAGGSLPLKLPGSYPGSIGFNSNGSVYLDGIKLVFESEKEEWERADKVIGCGFDPSQKKVFFTIDSELVHVVHCKSEEFGSPLYPTLGANTDVEVLVNFGQSMFSYAPANAQRTPNPCFIGPLVNSPAAALGYEDSRELFSMGRIDSQWLNRCTTKSSHNNGSKALDFDEDSEADLFEIVLDRSGRSPHAVL* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0821 456 PANTHER IMMUNOGLOBULIN SUPERFAMILY MEMBER 5 6 445 IPR043364 GO:0098609
Vvi18g0821 456 SUPERFAMILY Concanavalin A-like lectins/glucanases 273 369 IPR013320 -
Vvi18g0821 456 CDD SPRY_RanBP_like 253 364 IPR044736 -
Vvi18g0821 456 ProSiteProfiles B30.2/SPRY domain profile. 171 368 IPR001870 -
Vvi18g0821 456 SMART SPRY_3 194 367 IPR003877 GO:0005515
Vvi18g0821 456 Pfam SPRY domain 198 365 IPR003877 GO:0005515
Vvi18g0821 456 Gene3D - 134 378 IPR043136 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0821 Vvi-Chr18 8476859 8478526 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0821 - - vvi:100267848 899.812