Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0819 | ATGTCAGGAGGCATCGCGCGTGGTCGTCTCGCCGAGGAGCGAAAAGCCTGGCGTAAGAATCATCCCCATGGTTTCGTGGCTAAGCCAGAGACTGGTCCGGACGGTTCTGTCAATTTGATGGTGTGGCATTGCACCATCCCTGGTAAGGCTGGGACTGATTGGGAAGGGGGCTACTTCCCACTTACTTTGCACTTCAGTGAGGACTACCCTAGCAAACCCCCAAAGTGCAAGTTCCCTCAAGGTTTCTTCCACCCTAATGTCTACCCATCTGGAACTCTCATTCTGCCAAACTTAGCCACTCAAACACGTTTGGCACTTTGTTTAGGGTTGGAGACCTGCCATTACAGTGAAACAAATTCTAGTGGGCATTCAAGACTTGCTGGACCAGCCCAATGCTGCAGATCCAGCACAAACTGA | 417 | 0.5156 | MSGGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTLILPNLATQTRLALCLGLETCHYSETNSSGHSRLAGPAQCCRSSTN* | 139 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0819 | 138 | CDD | UBCc | 9 | 102 | IPR000608 | - | |
| Vvi18g0819 | 138 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 5 | 100 | - | - | |
| Vvi18g0819 | 138 | Pfam | Ubiquitin-conjugating enzyme | 9 | 101 | IPR000608 | - | |
| Vvi18g0819 | 138 | SUPERFAMILY | UBC-like | 5 | 99 | IPR016135 | - | |
| Vvi18g0819 | 138 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 138 | IPR000608 | - | |
| Vvi18g0819 | 138 | SMART | ubc_7 | 8 | 137 | - | - | |
| Vvi18g0819 | 138 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 119 | IPR016135 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g0819 | Vvi-Chr18 | 8465252 | 8468878 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0819 | K10577 | - | vvi:100262698 | 211.46 |