Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0811 ATGGGTTTGTGCAGATCATCCTCATCAATGGCCGTCTTTCTGTTCTTGCTGTTGGGGTTGGCGTCGGCGCTGGACATGTCGATCATCGGCTACGACGAGACCCATGGAGACAAATCGAGCTGGAGGACGGATGAGGATGTGATGGCTGTGTACGAGGCCTGGCTTGCAAAGCACGGCAAATCGTACAACGCTTTGGGGGAGAAGGAAAGAAGGTTTCAGATCTTTAAGGACAACCTCAGGTTCATCGATGAACACAACGCCGAGAACCGGACCTATAAGGTTGGTTTGAACCGGTTTGCTGACTTGACAAATGAGGAGTACCGGTCTATGTATTTGGGTACAAGGACTGCTGCTAAGCGGAGGTCTTCCAACAAGATTAGCGATCGTTACGCTTTTCGTGTCGGCGATTCCTTGCCGGAGTCCGTTGATTGGAGAAAGAAAGGTGCTGTCGTTGAAGTCAAAGACCAAGGAAGTTGCGGGAGCTGTTGGGCATTCTCTACAATTGCTGCTGTGGAAGGGATTAACAAGATTGTGACTGGTGGTCTGATATCACTATCAGAGCAGGAGCTGGTGGACTGTGATACATCATATAATGAAGGATGCAATGGGGGACTTATGGACTATGCCTTTGAGTTCATTATCAACAACGGAGGCATTGACTCTGAAGAAGATTACCCCTACAAAGCTTCCGATGGCAGATGTGACCAGTATAGGAAAAATGCCAAGGTTGTTACAATCGATGGGTATGAAGATGTTCCTGAGAATGATGAGAAGTCACTTGAAAAGGCAGTGGCAAATCAACCAGTGAGCGTTGCCATTGAAGCAGGTGGCAGGGAATTCCAACTCTACCAATCGGGTATATTTACTGGAAGATGTGGGACAGCACTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGTGTGGATTACTGGATTGTAAAGAACTCATGGGGTGCCAGCTGGGGAGAGGAAGGATATATCAGGATGGAGCGTGATCTTGCTACTAGTGCGACAGGGAAGTGTGGAATTGCTATGGAAGCCTCTTACCCTATCAAAAAAGGCCAAAACCCGCCCAACCCTGGCCCGTCTCCTCCCTCTCCAATAAAGCCCCCAACTGTCTGTGATAACTACTACGCATGTCCTGAGAGCAGCACCTGCTGCTGCATCTTTGAGTATGCTAAGTATTGCTTTCAATGGGGATGCTGCCCACTTGAGGCTGCCACCTGCTGTGAAGATCATGATAGCTGCTGCCCCCAGGAATATCCCGTCTGCAATGTCCGTGCAGGGACCTGCATGATGAGCAAGGACAACCCATTGGGAGTCAAGGCATTGAAGCGCACTGCTGCTAAACCTCATTGGGCCTATGGGGGTGATGGCAAGAGAAGCAGTGCTTAA 1404 0.4943 MGLCRSSSSMAVFLFLLLGLASALDMSIIGYDETHGDKSSWRTDEDVMAVYEAWLAKHGKSYNALGEKERRFQIFKDNLRFIDEHNAENRTYKVGLNRFADLTNEEYRSMYLGTRTAAKRRSSNKISDRYAFRVGDSLPESVDWRKKGAVVEVKDQGSCGSCWAFSTIAAVEGINKIVTGGLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIINNGGIDSEEDYPYKASDGRCDQYRKNAKVVTIDGYEDVPENDEKSLEKAVANQPVSVAIEAGGREFQLYQSGIFTGRCGTALDHGVTAVGYGTENGVDYWIVKNSWGASWGEEGYIRMERDLATSATGKCGIAMEASYPIKKGQNPPNPGPSPPSPIKPPTVCDNYYACPESSTCCCIFEYAKYCFQWGCCPLEAATCCEDHDSCCPQEYPVCNVRAGTCMMSKDNPLGVKALKRTAAKPHWAYGGDGKRSSA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0811 467 Pfam Granulin 388 435 IPR000118 -
Vvi18g0811 467 SUPERFAMILY Cysteine proteinases 42 354 IPR038765 -
Vvi18g0811 467 SUPERFAMILY Granulin repeat 374 408 - -
Vvi18g0811 467 FunFam Cysteine protease 1 374 437 - -
Vvi18g0811 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Vvi18g0811 467 Gene3D Cysteine proteinases 26 356 - -
Vvi18g0811 467 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Vvi18g0811 467 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Vvi18g0811 467 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Vvi18g0811 467 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 352 IPR013128 GO:0008234
Vvi18g0811 467 FunFam Cysteine protease 1 27 356 - -
Vvi18g0811 467 CDD Peptidase_C1A 139 353 IPR039417 -
Vvi18g0811 467 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Vvi18g0811 467 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Vvi18g0811 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Vvi18g0811 467 Gene3D Granulin 374 437 IPR037277 -
Vvi18g0811 467 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Vvi18g0811 467 SMART Inhibitor_I29_2 51 107 IPR013201 -
Vvi18g0811 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Vvi18g0811 467 SMART GRAN_2 377 434 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0811 Vvi-Chr18 8369453 8372843 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0811 K25900 - vvi:100241957 937.947