Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0806 ATGGGCCAATCAGCTTCTACTTCTGCGATATCATCAGGATCTAGTCGCCGAGGCAGCAATCACCCTCATCGATCCCGGAGTAAATCAATGGTGCAGATCCCTTCGATGCAGGTCGAAGAAAACGTTCAGTTTCGGCAGATCGATGAAGACTTGGACTACATCTCCGATCTGCCCGACGAATGCTTGGCTTGCATTTTCCAGTCGCTTGGATCTGGTGATCGCAAACAGTGCTCACTCGTCTGCCGGCGATGGCTCCGGATTGAGGGGCAGACCCGTCATCGACTTTCTCTCAATGCACACTCCGATCTACTTACCGTCGTTCCTTCTCTATTCTCTAGGAATCTGACTCGTCTCAAACTCCGCGCTTGCCGTGAATTGACCGATGCCGGCATGGGGGTTTTTGCGAAGAATTGCAAAGGGTTGAAAAAGCTTTCATGTGGATCTTGTACCTTTGGAGCCAAGGGCATGAGCGCAGTCCTAGATAATTGCTCTGCTCTCGAAGAGTTATCCGTGAAGCGCCTCCGAGGAATCTCCGATGGATCGGCTGTGGACCAGATTGGGCCCGGTGTAGCTGCATCATCTCTCAAAACAATATGCTTGAAGGAGCAGTATAATGGACAGTGTTTCTGGCCGCTTATTATCGGCGCCAAGAATCTACGGACACTAAAACTCTTCAGGTGTTCTGGGGATTGCGACAACCTTCTCCAGCTTGTTGCTAATCGAACCACTAGTATGGTTGAAATCCATCTGGAAAGGCTTCAAGTTAGTGATCTCGGCCTTGTAGCTATATCGCATTTTTTGGATCTTGAGATCTTACACCTTGTGAAGACTTCCGAGTGCACGAATGCAGGACTTGTGTCAGTCGCTGAACGATGTAAACTTCTGAGGAAGCTTCACATTGATGGATGGAAGGCAAACAGGATAGGCGATGAAGGTCTAAGTGCGGTTGCAAAATGTTGCCCCAATCTTCAGGAACTTGTTCTTATTGGTGTCAATCCCACAAAGTTGAGTTTGGAGATGCTGGCTGCAAATTGCCAGAATCTGGAGCGGTTGGCATTGTGTGCGAGTGATACTGTTGGTGATGCTGAGATTTCTTGTATTGCTGCAAAATGCTTGGCATTGAAGAAGCTATGTATCAAGAGCTGCCCTGTTTCGGATCAGGGTATGAGAGCACTTGCATGCGGATGCCCTAATTTGGTGAAGGTGAAGGTTAAGAAGTGCAGGGCAGTGACTTATGAGGGTGCGGATGGATTGAGGGCAAGTAGGGAATCACTGGCTGTCAATTTAGACACGGGTGAAACTGAGCATCAAGATGCAAGTGCTAGTGATGGTGGGGCACAGGAAAATGCAGTTGAATTGCCTCCCTTGGCCAGTCAAAATGGAGCTGCTAATATTGCTTCGAGCAGTTCTGGTCGATCAAACTCTCTTAAGGCAAGGTTAGGGCTTCTAACGGGAAGGAATTTAGTGGCCTCAACTTTGAGAAGGTGGACAAGCAGTAACAGCAGTTCCCGGGGTAATCAGAGAAGTAACTGA 1533 0.4853 MGQSASTSAISSGSSRRGSNHPHRSRSKSMVQIPSMQVEENVQFRQIDEDLDYISDLPDECLACIFQSLGSGDRKQCSLVCRRWLRIEGQTRHRLSLNAHSDLLTVVPSLFSRNLTRLKLRACRELTDAGMGVFAKNCKGLKKLSCGSCTFGAKGMSAVLDNCSALEELSVKRLRGISDGSAVDQIGPGVAASSLKTICLKEQYNGQCFWPLIIGAKNLRTLKLFRCSGDCDNLLQLVANRTTSMVEIHLERLQVSDLGLVAISHFLDLEILHLVKTSECTNAGLVSVAERCKLLRKLHIDGWKANRIGDEGLSAVAKCCPNLQELVLIGVNPTKLSLEMLAANCQNLERLALCASDTVGDAEISCIAAKCLALKKLCIKSCPVSDQGMRALACGCPNLVKVKVKKCRAVTYEGADGLRASRESLAVNLDTGETEHQDASASDGGAQENAVELPPLASQNGAANIASSSSGRSNSLKARLGLLTGRNLVASTLRRWTSSNSSSRGNQRSN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0806 510 Gene3D - 53 92 - -
Vvi18g0806 510 Gene3D Ribonuclease Inhibitor 103 185 IPR032675 -
Vvi18g0806 510 Pfam F-box domain 54 87 IPR001810 GO:0005515
Vvi18g0806 510 SUPERFAMILY RNI-like 105 440 - -
Vvi18g0806 510 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g0806 510 FunFam F-box protein SKIP2 112 439 - -
Vvi18g0806 510 SUPERFAMILY F-box domain 47 87 IPR036047 GO:0005515
Vvi18g0806 510 CDD F-box_AtTIR1-like 54 92 - -
Vvi18g0806 510 SMART LRR_CC_2 345 370 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 112 137 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 292 319 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 396 424 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 266 291 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 163 189 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 138 162 IPR006553 -
Vvi18g0806 510 SMART LRR_CC_2 371 395 IPR006553 -
Vvi18g0806 510 MobiDBLite consensus disorder prediction 1 18 - -
Vvi18g0806 510 Gene3D Ribonuclease Inhibitor 186 451 IPR032675 -
Vvi18g0806 510 FunFam F-box/LRR-repeat protein 4 54 92 - -
Vvi18g0806 510 PANTHER UNCHARACTERIZED 55 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0806 Vvi-Chr18 8334618 8336243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0806 - - vvi:100259063 907.131