Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0801 ATGGCGGCTTCTTGTTCCACCAATCTCATCAGCTTCCCACCATCTCTGAGAAAGTCAACATCGCCGTCCTATTCTCTCTCATGGCAAGCATCTCTCCCTTCCACCGTCTCCTTCGCCGTCGGCCGTCGGGTCTCTTCCAGAACAACCAAGTCGTTGGTGGTGGTTGTGACGGCCATGATGGAAGCAAAGCCCACGGTCCTCGTCGCAGAGAAGCTCGGAGAAGCGGGTCTCGAACTCCTCAAGGGCTTCGCCAACGTTGACTGCTCTTATAATATGAGCCCCGAGGAGCTTTGTACCAAGATCTCACTGTGCGACGCCTTAATCGTCAGGAGCGGCACTAAGGTTACTCGTGAGGTGTTCGAGTCCGCCGGCCGTCGCCTCAAGGTTGTCGGACGGGCTGGCGTTGGTATTGATAACGTTGACCTTTCGGCCGCCACGGAGCATGGATGTCTTGTTGTTAATGCCCCAACAGCTAATACTATTGCGGCTGCTGAGCATGGGGTTGCTCTTCTAACTGCTATGGCGCGTAACATCGCCCAAGCGGACGCTTCTGTCAAAGCCGGGAAGTGGGAAAGGAGTAAGTATGTAGGTGTGTCACTTGTTGGAAAAACCCTTGCTGTGATGGGATTTGGAAAGGTTGGATCAGAAGTTGCTCGGCGAGCTAAGGGGCTTGGCATGCATGTGATTGCACATGATCCATATGCCCCAGCAGACAGAGCCCGGGCAATTGGTGTGAATTTAGTGACCTTTGAAGAAGCCATATCAACTGCAGATTTTATTTCATTGCACATGCCTCTCACTCCTGCTACATCCAAGATTCTCAATGATGAGTCCTTTTCAAGGATGAAGAAAGGAGTTCGGATAGTCAATGTCGCTCGTGGTGGTGTGATTGATGAGGAAGCTCTAATAAGGGCCTTGGATTCAGGGATTGTCGCTCAGGCAGCGCTTGATGTGTTCACTGAAGAACCTCCACCAAAAGATAGTAAGTTGGTGCAGCATGAAAATGTGACTGTTACTCCACATCTTGGTGCCAGCACAACGGAGGCACAGGAAGGAGTGGCCATTGAAATAGCTGAAGCTGTTGTTGGGGCTCTAAAAGGGGAGCTTGCTGCTACTGCAGTAAATGCACCCATGGTTCCTGCTGAGGTTTTATCCGCACTTGCGCCATTTGTTGTTCTGGCAGAGAAGCTTGGCCGCCTGGCTGTGCAACTGGTTGCAGGTGGAAGTGGTGTGAGATCAGTGAAGGTGACATATGCCTCTTCCCGGGGTCCAGATGATCTTGACACTCGCTTGTTGCGTGCTATGGTCACCAAGGGTCTAATTGAGCCTATTTCCAGCGTTTTTGTGAACTTGGTGAATGCTGACTTCACTGCCAAGCAGAGAGGACTGAGGATAACAGAAGAAAGAGTGGTGCTAGATGGCTCACCGGAGAACCCGCTTGAGTTTATCCAGGTACAAATTGCTAACGTGGAGTCGAAATTTGCCAGTGCTATCTCGGAGTCTGGTGAGATTAAAGTGGAAGGAAGGGTGAAAGATGGGAAACCTCATCTGACCAAAGTTGGATCATTTGGGGTGGATGTGAGTCTGGAAGGGAGCCTCATTCTGTTGAGGCATGTTGATCAACCTGGTATAATTGGAAAGGTGGGAAGCATCCTGGGTGAGGAGAACGTCAATGTGAGTTTCATGAGTGTTGGGAGGACTGCACCACGAAAACAGGCTGTAATGACAATTGGTGTAGATGAGGAGCCCAGCAGGGAAGCATTAACAAGAATTGGGAATCTACCAGCCATTGAAGAGTTTGTTTTCCTCGAGTTGTAG 1818 0.505 MAASCSTNLISFPPSLRKSTSPSYSLSWQASLPSTVSFAVGRRVSSRTTKSLVVVVTAMMEAKPTVLVAEKLGEAGLELLKGFANVDCSYNMSPEELCTKISLCDALIVRSGTKVTREVFESAGRRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTIAAAEHGVALLTAMARNIAQADASVKAGKWERSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVNLVTFEEAISTADFISLHMPLTPATSKILNDESFSRMKKGVRIVNVARGGVIDEEALIRALDSGIVAQAALDVFTEEPPPKDSKLVQHENVTVTPHLGASTTEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSALAPFVVLAEKLGRLAVQLVAGGSGVRSVKVTYASSRGPDDLDTRLLRAMVTKGLIEPISSVFVNLVNADFTAKQRGLRITEERVVLDGSPENPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGKPHLTKVGSFGVDVSLEGSLILLRHVDQPGIIGKVGSILGEENVNVSFMSVGRTAPRKQAVMTIGVDEEPSREALTRIGNLPAIEEFVFLEL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0801 605 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 253 275 IPR029753 -
Vvi18g0801 605 PANTHER FORMATE DEHYDROGENASE 1 63 372 - -
Vvi18g0801 605 SMART AdoHcyase_NAD_2 193 347 IPR015878 -
Vvi18g0801 605 Gene3D - 159 341 - -
Vvi18g0801 605 FunFam D-3-phosphoglycerate dehydrogenase 2 chloroplastic 344 375 - -
Vvi18g0801 605 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 205 232 IPR029752 -
Vvi18g0801 605 Pfam ACT domain 534 595 IPR002912 -
Vvi18g0801 605 ProSiteProfiles ACT domain profile. 533 605 IPR002912 -
Vvi18g0801 605 SUPERFAMILY ACT-like 523 600 IPR045865 -
Vvi18g0801 605 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 168 343 IPR006140 GO:0051287
Vvi18g0801 605 NCBIfam phosphoglycerate dehydrogenase 66 604 IPR006236 GO:0004617|GO:0006564
Vvi18g0801 605 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 162 344 IPR036291 -
Vvi18g0801 605 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 63 192 - -
Vvi18g0801 605 FunFam D-3-phosphoglycerate dehydrogenase 380 531 - -
Vvi18g0801 605 FunFam D-3-phosphoglycerate dehydrogenase, chloroplastic 532 605 - -
Vvi18g0801 605 FunFam D-3-phosphoglycerate dehydrogenase 159 341 - -
Vvi18g0801 605 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 66 375 IPR006139 GO:0016616|GO:0051287
Vvi18g0801 605 SUPERFAMILY Serine metabolism enzymes domain 381 527 IPR029009 -
Vvi18g0801 605 CDD ACT_3PGDH-xct 533 605 - -
Vvi18g0801 605 Gene3D - 532 605 - -
Vvi18g0801 605 CDD PGDH_4 66 368 - -
Vvi18g0801 605 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 282 298 IPR029753 -
Vvi18g0801 605 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 387 496 IPR045626 -
Vvi18g0801 605 Gene3D - 68 368 - -
Vvi18g0801 605 Gene3D - 379 531 IPR029009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0801 Vvi-Chr18 8271939 8274887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0801 K00058 - vvi:100259056 1123.61