Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0790 ATGAACCATATCCCAAAACTCATGGATAGGACAGTTGGTTTCTTTGTTTTGGTTTTGCTGTTAACTTGCTATCCATCTTCATCTGAAACGTATGATACTCTGAGCGAAGGCTCGTCTCTTTCCGTGGAGAAATCAAATGATGTTCTCATTTCAGCAAATGGTATATTCTCTGCTGGGTTTTATCAGGTCGGCAACAACACTTTCTGCTTCGCCATATGGTTCACAAAATCATGGGGTGCAACCACAGTTTGGATGGCGAACCATGACCAACCGGTCAACGGTAGAGGCTCCAAGCTTTCTTTGTTGAGGAATGGCAATCTCATCTTAACTGATGCTGGTAAAATCATGGTTTGGATGATCAACACCGACATCATGCCACCAAGAAGAACAACTTCTTCACAAAACAGTCAGGCTAATGACGATGTACCTCCAATTGAGGGTTTGCCTCCCGTGAGTGCAGAAGGGATCTATAGGTATCTTGGGACACTAGTTGGTTTAGTTGAACGCCAAGCTCGAGCTGTTGGGACTAATGTTCAGGGACAGTCTTCATCTTCTAGGGGTAGCTCTTTTGATGACTTCAAGAAATTGGGTCCTCCTTACTTTTCTGGTGCTACAGATCCCACAGAGGCAGAGGCTTGGATCCTTAAGATGGAGAAATTCTTTGGTGTCATAGATTGCTCTGAGGAGCAAAAAGCCTCTTATGCAGCTTTTATGTTAGATAAAGAGACAGATCATTGGTGGCGTATGACTAAGAGACTTTTGGAGGATCAGGGACCCATAACATGGAGACAATTTAGGGAGGCTTTCTACAAGAAGTATTTCCCTGACAGTGTTAGGTGGCAGAAGGTGGGAGAGTTTATTCGTTTGGAACAGAGGGATATGACTGTGGCTCAGTATGAGGCCAAATTTACAAAGTTATCACGTTTTTCCCCACAGTTGATTGCTATAGAGGAGGAAAAGGCATTAAAGTTTCAGGATGGATTGAAGCCTTATTTGAAGAACAAGATATCTATTCTGAAGCTTGGTGTCTATTCAGAGGTTGTTGACAGAGCCCTTATAACAGAGAAAGATAATGAAGAGCTTCATCAGTATAGGGAACAGCAAAGGAAGCGAAATAGGAGTGATGGTGCTCATGGTAATCAAGCACAGCGAAGGTCTACATCAGGAAGAAATCAGAATAAAGGGAAGGCAGCGCAGAATTTAGATGGGGCTTGTCCTACTTGTGGTAAGAAGCATGGGGGTAGGCCATGCTATAGAGAGACTGGAGCTTGCTTTGGTTGTGGGAAGCAAGGACATTTGATCAGAGAATAG 1311 0.4355 MNHIPKLMDRTVGFFVLVLLLTCYPSSSETYDTLSEGSSLSVEKSNDVLISANGIFSAGFYQVGNNTFCFAIWFTKSWGATTVWMANHDQPVNGRGSKLSLLRNGNLILTDAGKIMVWMINTDIMPPRRTTSSQNSQANDDVPPIEGLPPVSAEGIYRYLGTLVGLVERQARAVGTNVQGQSSSSRGSSFDDFKKLGPPYFSGATDPTEAEAWILKMEKFFGVIDCSEEQKASYAAFMLDKETDHWWRMTKRLLEDQGPITWRQFREAFYKKYFPDSVRWQKVGEFIRLEQRDMTVAQYEAKFTKLSRFSPQLIAIEEEKALKFQDGLKPYLKNKISILKLGVYSEVVDRALITEKDNEELHQYREQQRKRNRSDGAHGNQAQRRSTSGRNQNKGKAAQNLDGACPTCGKKHGGRPCYRETGACFGCGKQGHLIRE* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0790 436 MobiDBLite consensus disorder prediction 359 378 - -
Vvi18g0790 436 MobiDBLite consensus disorder prediction 359 405 - -
Vvi18g0790 436 MobiDBLite consensus disorder prediction 379 398 - -
Vvi18g0790 436 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 125 IPR036426 -
Vvi18g0790 436 Pfam Retrotransposon gag protein 234 330 IPR005162 -
Vvi18g0790 436 SMART blect_4 40 142 IPR001480 -
Vvi18g0790 436 ProSiteProfiles Bulb-type lectin domain profile. 31 157 IPR001480 -
Vvi18g0790 436 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 162 435 - -
Vvi18g0790 436 Gene3D - 26 141 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0790 Vvi-Chr18 8181544 8185009 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0790 - - vvi:109122759 606.29