Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0780 ATGGAGACTGTTTATCCAGTTGCCACATTCAAAGTGCCTCCTCGCCCCCTTCTCCCAAGTATCAAAAGTAACGTCACTAGTTTCCGATTTTTACACTCCCACCTACGAAATAAACAACTTGAGTTTCAGAATCACGGCTTTTCTTCTCAATTTATATTCAGATGTAGTGCCTGTAGCAAATTCTTGGTTTCTCAATCTGAACACGAAAGATTAAAGTGCGCACAGCAACTGTTTGATAATTTTCCCAATAGGGATGTGATCTCTTGGTCCGCTCTCATTGCTGCTTATTCTCGATGTGGGAATTTTGCCCAAGCATTTGGTTTGTTCCAGAAAATGATGGGTGAAGGATTGCAGCCCAATGGATTTTCATTAGCCAGCTTGCTCAAGGTGAGTTGTAGTACGGGGGAAATTGGACTTTGCAGACAGCTCCATGGCTGGTCTATCCGAACCGGTTTTGGATTAGATTCTGGAATAAGGGCTGCCTGGATAACCATGTATTCCCGTTGTGGTGTGTTGGAAGATGCCCAGAGGGTTTTTGACGAGACCTCTCTTCTTGCTCTCGATATCCTCTTGTGGAATTCAATTATAGCAGCCTATATCTTCCATGGGTGTTGGGTTGAGGTGCTTCGTCTGTTTTGCAAAATGGTGTCAGTTGGGGTTGTTGCACCAACAGAGCTCACCTATGCTAGTGTTGTCAATGCTTGTGGTTCTTCAGGTGAGGAGAAGTATGGAGCAATGGTTCATGGAAGGATCATCAAAGCTGGACTTGAAGCAACTAATCTATGGAATTCTCTTGTTACATTTTATGGCAAATGTGGGAACTTACAACATGCAAGCCAATTATTTGAGAGGATTTCTAGGAAGGATGTTGTTTCATGGAATGCAATGATTGCAGCCAATGAACAAAGAGGAGAAGGGGAGAATGCTCTAGGTTTATTCCGTAGGATGCTCAAAGTTGAACCGCCTGTTCAACCAAATCGTGTCACTTTTCTTAGTTTGCTTAGTGCTGTTTCTGGGCTTTCAGCTTTAAGGTGTGGAAGAGAAATTCATGCTCATATCTTTAGACTCAGCCTTGAAGTTGATACCAGCATCACCAATTCTCTCATCACCTTTTATTCAAAATGCAGGGAAGTTGGCAAAGCAAGAGAGATTTTTGAGAGGTTGTTGTTAAGGGATATCATTTCATGGAATTCAATGCTTGCTGGATATGAGCAGAATGAGCAGCAAGGAAGATGTTTTGATATCTTTAAGAGAATGATGCTTTCAGGGATTGAGCCAGATTCACACAGTCTCACTATTATTTTCAATGCAGCTTCTCGTGATTCATCCGGGTTAATATATTTTCGAAGGGGTAAAGAAATTCATGGGTATATTTTGAGGAGAATTACCCCAGGAGGTGTGAGTTTGTCAGTCTCTAATGCAATTCTTAAAATGTATGCAAAATTCAACCGTATAGCAGATGCTGAGAAGATTTTCAAGGGGATGAAGAATAGGGATTCATACTCCTGGAATGCAATGATGGATGGGTATTCAAGAAATGCCAAGTTTGAGGATGTCCTAATGATTTTTCTAGATATTCTTAAGCAAGGTTTCCCATTAGATCATGTGAGCCTCTCAATTCTCCTTACGTCCTGTGGCAGATTGGTTTCCCTCCAACTGGGTAAGCAGTTTCATGCTGTTGTTGCCAAACTCTTCAATGGCCAGGATTGTCCTCACCAGGATTCTCTTTTGTCAATCAACAATGCATTGATTTCCATGTATTCAAAATGTGGAAGTATTAAAGATGCTGCCCAAGTATTTTTAAAGATGGAAAGGAAGGACGTCTTTTCTTGGACAGCTATGATCACAGGCTGCGCACACCATGGACTGGCTGTTGAAGCCCTTCAGCTATTTGAGAGAATGAAAACAGATGGCATCAAGCCCAACCAGGTAACTTTCCTCGCACTACTCATGGCTTGCGCTCATGGGGGTCTTGTTCAAGAGGGGAGCTATTATTTTGACTCCATGTACAATGATTATGGTCTAAGCCCAAGTATTGAACACTATGCATGCATGATTGATTTGTTTGGCCGATCAGGTCAGTTTGATCGTGCAAAAAGCCTGGTTGAGTTTGGAATCACTCTCTTTAAGCCCTATCATGATGATATCTTGAACCTGTGGAAGGTTTTACTTGGGGCATGTCATGCGTCTAAGCAGTTAGATCTTGGGGTAGAGGCTGCAACAAAGATTCTTGAATTGGAACCTGAAGATGAGGCTACCTACATTCTTCTAGCGAACCTTTATGCCTCTTCAGGCTTATGGGAGGATGCAATCAAGGTTAGGAAGGCAATGAGAGATAAAGGGCTAAGGAAGGAAGTTGGGTGCAGCTGGATAGATACTGGAAACAGGAGACACGTCTTTGTGGCAGGAGATGTATATCATCCTCAGAGAAAAGAGATATATGAGAAGCTGGCACAGTTGAATTATAGTTGTAGAAGGATGGGCTATGTCCCCATGACAGAGCTTGTGCTTCATGATGTGGATGAGACAGAGAAGGAAGCAATTCTGGGATGTCATAGTGAGAAATTGGCGGTGTCTTTTGGTCTTTTGAATTGTGGGGTTGGCAATGGTGTAATTAGAGTGATGAAGAACTTGCGGGTGTGTGAGGATTGTCATAGCTGGATGAAATTTGCTTCCCTACTGGAGAAGAGGGAAATACTACTTAGGGATTCACAGCGATTCCATTTGTTTAGGGATGGCAGCTGTTCTTGTGGAGATTATTGGTAG 2766 0.4248 METVYPVATFKVPPRPLLPSIKSNVTSFRFLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 682 702 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 192 220 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 262 289 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 366 391 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 473 498 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat 291 318 IPR002885 -
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vvi18g0780 921 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 452 557 - -
Vvi18g0780 921 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 49 152 - -
Vvi18g0780 921 Pfam PPR repeat family 606 654 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat family 84 132 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat family 392 437 IPR002885 -
Vvi18g0780 921 Pfam PPR repeat family 499 545 IPR002885 -
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Vvi18g0780 921 SUPERFAMILY TPR-like 565 753 IPR011990 GO:0005515
Vvi18g0780 921 Pfam E motif 733 792 IPR046848 -
Vvi18g0780 921 Gene3D Tetratricopeptide repeat domain 161 320 IPR011990 GO:0005515
Vvi18g0780 921 Gene3D Tetratricopeptide repeat domain 321 446 IPR011990 GO:0005515
Vvi18g0780 921 Gene3D Tetratricopeptide repeat domain 578 747 IPR011990 GO:0005515
Vvi18g0780 921 Gene3D Tetratricopeptide repeat domain 462 565 IPR011990 GO:0005515
Vvi18g0780 921 Gene3D Tetratricopeptide repeat domain 49 152 IPR011990 GO:0005515
Vvi18g0780 921 SUPERFAMILY TPR-like 87 772 IPR011990 GO:0005515
Vvi18g0780 921 NCBIfam pentatricopeptide repeat 609 642 IPR002885 -
Vvi18g0780 921 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Vvi18g0780 921 NCBIfam pentatricopeptide repeat 87 120 IPR002885 -
Vvi18g0780 921 NCBIfam pentatricopeptide repeat 581 608 IPR002885 -
Vvi18g0780 921 NCBIfam pentatricopeptide repeat 501 534 IPR002885 -
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Vvi18g0780 921 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 323 857 IPR046960 GO:0003723|GO:0009451
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Vvi18g0780 921 FunFam Pentatricopeptide repeat-containing protein At2g34400 566 821 - -
Vvi18g0780 921 FunFam Uncharacterized protein 161 320 - -
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Vvi18g0780 921 Pfam DYW family of nucleic acid deaminases 828 921 IPR032867 GO:0008270
Vvi18g0780 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 750 784 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0780 Vvi-Chr18 8069331 8072096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0780 92 921 Glycoside Hydrolase AT3G49170 35.545 1.19e-166 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0780 - - vvi:104882530 1857.8