Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0772 ATGGACCTCGTTATTCTCAAAAATCTAGTAATAATTTATTGGAGTAATTTGAGAAGTAGGAATATTAAAGTTCATTCTCTCTCACATGCATGCCTGCACACACATGCATGTCCATGCTCTCAGCATGGCTATTTATGTACAAGTTTCTATTATGTAAATCAGTCTATTTGCTTGTGGATTTGCAAAATAGGGCTTAAAACAATGGAAATCTCCCCAAGTTCTACATGCTTGCCTTGTGAGATTCCTAGCTGTGATGTGAAAGTTTTGGAAGGCCTTACCTCTGAGGTTTTTGCTTGTGCATGGAGTCCAGCTGGCTCATTTCTTGCTTCAGGGTGTCATGATGTTCACGCAGTGTGGTTCATTACAAATGGACCTTGTAGTACAATGCAGAATGGACTGCTAAATATTGTGTTGAAGCATTTTAGAGGTAGAACAAATGAAAAAAACAAGGATGTGACAACCCTTGATTGGAATGGAGATGGAACAGTACTTGCAACAGGTTCTTATGATAATCAAGCAAGAATATGGAGCAGGGTTGGTATGTTGTTTTATACTTTGAACAAACATAAAGGGCCAGTCTTCTCTCTGAAGTGGAACAAGAAAGGTGATAATCTTCTAAGTGGCAGCATGGATAAAACCGCAATTGTGTGGGGTGTAAAAACAGGGGAATAG 672 0.3914 MDLVILKNLVIIYWSNLRSRNIKVHSLSHACLHTHACPCSQHGYLCTSFYYVNQSICLWICKIGLKTMEISPSSTCLPCEIPSCDVKVLEGLTSEVFACAWSPAGSFLASGCHDVHAVWFITNGPCSTMQNGLLNIVLKHFRGRTNEKNKDVTTLDWNGDGTVLATGSYDNQARIWSRVGMLFYTLNKHKGPVFSLKWNKKGDNLLSGSMDKTAIVWGVKTGE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0772 223 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 177 - -
Vvi18g0772 223 PANTHER WD40 REPEAT PROTEIN 54 223 IPR045183 GO:0003714|GO:0016575
Vvi18g0772 223 Gene3D - 78 223 IPR015943 GO:0005515
Vvi18g0772 223 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 223 - -
Vvi18g0772 223 SUPERFAMILY WD40 repeat-like 71 222 IPR036322 GO:0005515
Vvi18g0772 223 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 177 IPR001680 GO:0005515
Vvi18g0772 223 Pfam WD domain, G-beta repeat 183 217 IPR001680 GO:0005515
Vvi18g0772 223 Pfam WD domain, G-beta repeat 139 177 IPR001680 GO:0005515
Vvi18g0772 223 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 223 IPR001680 GO:0005515
Vvi18g0772 223 SMART WD40_4 179 218 IPR001680 GO:0005515
Vvi18g0772 223 SMART WD40_4 82 120 IPR001680 GO:0005515
Vvi18g0772 223 SMART WD40_4 134 177 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0772 Vvi-Chr18 8020876 8024895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0772 86 223 Miscellaneous Gene Families AT5G08390 28.571 2.53e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0772 K04508 - zju:107420520 243.817