Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0771 ATGACATATGTTTGTAAAGTTGGCGAAAATAGGCCAGTCAAAACTTTCTCAGGGCACCAGGATGAAGTTAATGCTGTCAAATGGGATCCAACAGTTTCCTTTTTGGCTTCTTGCTCCGATGATTACACTGCAAAGGTGATCGATAATTTTTCCTTAACTCCTTTCTATATGAAGCAGGATGATCATTTGCATGATTTGAAGGAACATACCAAGGAGATATATACAATCAGGTGGAGTCCTACTGGTGCTGGTACAAACAACCCTAATCATCAGTTGGTGTTAGCAAGTGCCTCCTTTGATTCCACAATAAAGCTATGGGATGTGGAATTAGGGTGCCTTCTCTACAGCTTGAATGGCCACAGCTTAGAATACAACAGCAGTCACCATAATTTAAAAACTTACACTGGAAATGGTGGGATTTTTGAAGTTTGTTGGAACAAGGAAGGTGACAGGATTGCTGCTTGTTTTTCTAACAACATAGTTTGTGTCTTGGTTTCCGTATGTAGCCGATTCTACTTCCCGATCCTTGTATATTATGATCATCATCATGGAAGGACTTCATTTGTAGAATTTGATTATTTTCTGGAACTCATATGTTTAGGTTGGAAAGCAGTTGTTGTTTGTGCTTGGAATCCAACATGTTCTCTCCTTGCATCCGGGTCTCATGATTCTACTGCTAGGATTTGGACTATTGTTGATGGAGCTTGTAACTCTACTCTACAAGATGTTCTTGTGTTGACACATGCAGGAGCCATGACTGTTGAGGATAATGGCTTTGCTGCAATCTGTGAGCTTGATTGGAAAGGGGATGGGACTCTGCTGGCAACGGGTTCTTGTACTGGGGAAACAAGAATATGGACTCCAAATGGAGCATTGGTGGCTTCTTTTGAGGAAGATATGGGACACATTGTTTCTCTACAATGGAACCAGATGGGTAATAGTCTTTTAAGCTGTGGTTCAGATAAAGTCGTTGTGTGGGACATAAACACTGTTGGATCACGACAAGAATTTAGCTTTCATTCTGCTCGAATTCTTGATGCTGATTGGCGAAACAATATTTCATTCGCAACATGCTCTGCTGACAGGAAGATACATGTTTGTGAAGTCGGCCTGAACCGCCCTTATAAAACTTTCTTGGGGCATCGGGCAGAAATTAATGGTATCCGGTGGAGTCCAACAGGCACTTTATTGGCTTCGTGCTCTGATGATACCTCCATAAAGATATGGAGTATGAATCACAATTCGTTTGTGCGCGATTTGAGGAGTCACAAGAGGGAGGTATACTGTATTGAATGGAGTCCTACTGGGCCTACGACAGATAACCCGAATCTGACACTACTACTGGCTAGTTCATCTTTTGATAACACCATAAATGTATGGGATGTGGAGCGAGGGAACCCTATATATGGCCTGACTCGCCACAGGAATATCATATATACAATTGAATTTAGCCCCAATGGGGAGTACTTGGCAAGTGGCTCTTTAGACAACTGGCTCTATGTCTGGTCGGTGAAAGAGGGAAGGCTTATCAAATCGTACTATGGAGGTGGTGGAGTTACAGACATCAGTTGGAACAAGAGTAGTGACAAAATTGCTGTTTCTTTTGTCAACAAATTAGTTTGTGTTTTGGATCTTAAAATGTAA 1644 0.4167 MTYVCKVGENRPVKTFSGHQDEVNAVKWDPTVSFLASCSDDYTAKVIDNFSLTPFYMKQDDHLHDLKEHTKEIYTIRWSPTGAGTNNPNHQLVLASASFDSTIKLWDVELGCLLYSLNGHSLEYNSSHHNLKTYTGNGGIFEVCWNKEGDRIAACFSNNIVCVLVSVCSRFYFPILVYYDHHHGRTSFVEFDYFLELICLGWKAVVVCAWNPTCSLLASGSHDSTARIWTIVDGACNSTLQDVLVLTHAGAMTVEDNGFAAICELDWKGDGTLLATGSCTGETRIWTPNGALVASFEEDMGHIVSLQWNQMGNSLLSCGSDKVVVWDINTVGSRQEFSFHSARILDADWRNNISFATCSADRKIHVCEVGLNRPYKTFLGHRAEINGIRWSPTGTLLASCSDDTSIKIWSMNHNSFVRDLRSHKREVYCIEWSPTGPTTDNPNLTLLLASSSFDNTINVWDVERGNPIYGLTRHRNIIYTIEFSPNGEYLASGSLDNWLYVWSVKEGRLIKSYYGGGGVTDISWNKSSDKIAVSFVNKLVCVLDLKM* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0771 547 Pfam WD domain, G-beta repeat 417 461 IPR001680 GO:0005515
Vvi18g0771 547 Pfam WD domain, G-beta repeat 208 229 IPR001680 GO:0005515
Vvi18g0771 547 Pfam WD domain, G-beta repeat 466 503 IPR001680 GO:0005515
Vvi18g0771 547 Pfam WD domain, G-beta repeat 11 47 IPR001680 GO:0005515
Vvi18g0771 547 Pfam WD domain, G-beta repeat 374 410 IPR001680 GO:0005515
Vvi18g0771 547 Pfam WD domain, G-beta repeat 62 107 IPR001680 GO:0005515
Vvi18g0771 547 PANTHER WD40 REPEAT PROTEIN 203 544 IPR045183 GO:0003714|GO:0016575
Vvi18g0771 547 Gene3D - 1 166 IPR015943 GO:0005515
Vvi18g0771 547 Gene3D - 202 547 IPR015943 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 239 IPR001680 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 48 - -
Vvi18g0771 547 ProSitePatterns Trp-Asp (WD) repeats signature. 448 462 IPR019775 -
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 508 - -
Vvi18g0771 547 SUPERFAMILY WD40 repeat-like 192 545 IPR036322 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 116 IPR001680 GO:0005515
Vvi18g0771 547 FunFam Uncharacterized protein 202 547 - -
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 466 - -
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 512 IPR001680 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 470 IPR001680 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 412 - -
Vvi18g0771 547 ProSitePatterns Trp-Asp (WD) repeats signature. 94 108 IPR019775 -
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 419 IPR001680 GO:0005515
Vvi18g0771 547 SUPERFAMILY WD40 repeat-like 9 235 IPR036322 GO:0005515
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 109 - -
Vvi18g0771 547 CDD WD40 203 503 - -
Vvi18g0771 547 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 48 IPR001680 GO:0005515
Vvi18g0771 547 PRINTS G protein beta WD-40 repeat signature 94 108 IPR020472 -
Vvi18g0771 547 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Vvi18g0771 547 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Vvi18g0771 547 SMART WD40_4 506 544 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 127 165 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 289 327 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 413 461 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 239 287 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 371 410 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 59 107 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 330 368 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 464 503 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 9 48 IPR001680 GO:0005515
Vvi18g0771 547 SMART WD40_4 192 230 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0771 Vvi-Chr18 8002639 8020699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0771 335 546 Miscellaneous Gene Families AT5G08390 23.256 3.47e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0771 K04508 - vvi:104882527 704.516