Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0759 ATGGACAGAGCATTCGGCAACCACACCCTCCACCGATCTTCCGCCGGCTCCACTCCGGTTCTTGTTCCAAGAGACGTGCCTTTTCCGGGGAATCTTTTGGACCATCAGTTCGGACGCAGTAACTCGCCGGAAACTGGTGCCCAAAACCCTTTCTTTATTGGAATCCACCAGGATCAACCCCTAGAGGACGTCTTTTCTCGTCTCAATCTCTCGTCCGGTGTTGGTGGTGGGTCGATGCTCGGAGACACGGTGACCGGTGGGTACGGCTTTTTGCCGCTTTCTTTGCAACAAATACAGCAAACGAATGACGAGTTTCAGAGTTGGAGTTTTCCCAGAAGCGGCATTGATACCTTCGGGGAGGTGGGCCTGGGGAATCATGAGGTGAGGGCGAGTGCTGAGAGTCGTGACGGCTTTCTTGGGTTTTCGAATCCTACATCGGTTATTCGCGGGCTGAGTACTGAATCAAGAAAGAGAAGTTTGGGGGCTGAGAGGACTCGAGTGATGCAAAAATTATTGGAGTATCTTACCACCCCAGAACAAATTTCGATTGCCATGTCTGCCCTGTGGCCTGTTACTGTTGCATTGACCAAGGATACTAGTGGTCATCATGTGATCCAGCATTGCTTGAAACTTTTTTCTTGCCAAGACAATATGTATCTTATTAAGGAGGTGGCAGAGAATTGCTTTGAAATTGCAACCAATAGAAGTGGGTGCTGTGTGCTGCAGTCATGTGTGGAAAACTCACAGGGAGAACTTAGAGAGCAACTAATGGCTGAAATAATAGCTAACGCGCTACCCCTGGCAGAAGACCGTTATGGTAACTATGTGGTGCAACACTTGATGGGATTGAAGATACCAGAAGTCATCACAAATCTCCTGAAGCAGTTTGAAGGGACATTCATTTCTCTCTCCTGCAATAAGTATGGTAGTAATGTGGTGGAAAAATTTCTGATAGAATCCAAAGACGAGCAATCGTCGCAGATTATCATAGAGTTGCTCAGAAGTCCAAATGTTTCTATGCTGCTTCTGGATCCTTTTGGAAACTTCGTCATTCAATCAGCATTGTCTGTATCTAAGGTTAGATCATTTCCAAAATCCCACTATTCTAGTTTACCTGTTTGTTAA 1125 0.464 MDRAFGNHTLHRSSAGSTPVLVPRDVPFPGNLLDHQFGRSNSPETGAQNPFFIGIHQDQPLEDVFSRLNLSSGVGGGSMLGDTVTGGYGFLPLSLQQIQQTNDEFQSWSFPRSGIDTFGEVGLGNHEVRASAESRDGFLGFSNPTSVIRGLSTESRKRSLGAERTRVMQKLLEYLTTPEQISIAMSALWPVTVALTKDTSGHHVIQHCLKLFSCQDNMYLIKEVAENCFEIATNRSGCCVLQSCVENSQGELREQLMAEIIANALPLAEDRYGNYVVQHLMGLKIPEVITNLLKQFEGTFISLSCNKYGSNVVEKFLIESKDEQSSQIIIELLRSPNVSMLLLDPFGNFVIQSALSVSKVRSFPKSHYSSLPVC* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0759 374 ProSiteProfiles Pumilio RNA-binding repeat profile. 295 331 IPR001313 GO:0003723
Vvi18g0759 374 Gene3D - 146 371 IPR011989 -
Vvi18g0759 374 ProSiteProfiles Pumilio RNA-binding repeat profile. 259 294 IPR001313 GO:0003723
Vvi18g0759 374 ProSiteProfiles Pumilio RNA-binding repeat profile. 223 258 IPR001313 GO:0003723
Vvi18g0759 374 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 39 374 IPR033133 GO:0003723
Vvi18g0759 374 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 165 359 - -
Vvi18g0759 374 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0759 374 SUPERFAMILY ARM repeat 165 362 IPR016024 -
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 193 224 IPR001313 GO:0003723
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 301 333 IPR001313 GO:0003723
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 338 355 IPR001313 GO:0003723
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 165 183 IPR001313 GO:0003723
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 264 281 IPR001313 GO:0003723
Vvi18g0759 374 Pfam Pumilio-family RNA binding repeat 227 261 IPR001313 GO:0003723
Vvi18g0759 374 SMART pum_5 295 330 IPR001313 GO:0003723
Vvi18g0759 374 SMART pum_5 333 368 IPR001313 GO:0003723
Vvi18g0759 374 SMART pum_5 223 258 IPR001313 GO:0003723
Vvi18g0759 374 SMART pum_5 259 294 IPR001313 GO:0003723
Vvi18g0759 374 SMART pum_5 187 222 IPR001313 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0759 - - vvi:100854713 386.726