Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0758 ATGGATTGTAACTGTGACCATGATGGAGTAAATTGTGTTTATGAGAGACGGTATGCTGAGATGAGCTCTAGCAGTGGTGTGCTTGGGGAGGACATCATTTCTTTTGGCAACCAAAGTGAAGTTGTCCCACAAAGGGCTGTTTTTGGTTGTGAAAATGTGGAAACCGGTGATCTTTACAGCCAACGAGCAGATGGCATAATGGGTCTAGGCCGTGGTCAGCTCAGCATTGTAGATCAACTTGTTGACAAGAATGTCATTAATGATTCATTTTCATTATGTTATGGTGGGATGCATGTAGGTGGAGGGGCTATGGTTCTTGGTGGGATTCCACCTCCCCCTGATATGGTCTTCTCCCGTTCAGATCCTTACCGCAGTCCATATTACAATATTGAGCTCAAGGAAATACATGTTGCTGGGAAGCCATTGAAATTAAGCCCAAGTACCTTTGATAGAAAGCATGGAACAGTCCTGGATAGTGGAACTACATATGCTTACCTTCCAGAAGAAGCTTTTGTTGCATTCAGGGATGCAATTATAAAAAAAAGTCATAACCTCAAGCAAATCCATGGTCCTGACCCGAATTATAATGATATTTGCTTTTCTGGTGCTGGAAGGGATGTCTCCCAACTCTCAAAAGCATTTCCAGAGGTTGACATGGTATTTAGCAATGGGCAGAAGTTGTCACTGACTCCAGAAAACTACTTGTTCCAGCATACAAAAGTTCATGGTGCATACTGCCTGGGAATTTTCCGGAATGGGGATTCAACTACTCTTTTAGGAGGAATCATTGTTCGTAATACCCTTGTAACTTATGATCGGGAGAATGAAAAGATTGGATTTTGGAAAACTAATTGCTCAGAACTATGGAAGAGACTGCATATTCCTGGTGCTCCTGCAGCAGCCCCTATTGTTCCCACTCCTAAATCTGTTTCTGCACCAGCACCTGTTGTTTCTTATAACAATAATACAACTGTTGGAATGCCTCCTACAGTGGCTCCAAGCGGATTGCCTCAGGAAGTTCTTCCAGGAGAATTCCAAGTTGGACTTATAACGTTTGATATGTCGTTTAGTGTCAACTACTCCAATATGAAGCCTAACTTCACAGAACTTGCTGAGTTTATCGCCCATGAGTTGGAAATTAATGCTTCACAGGTTCATTTCTTGAACTTCTTTTCAAAAGGAAATCATTCTGTCATTAGATGGGCTATATTTCCGGCAGAATCTGCCACTTACATTTCCAACTCGACTGCGATGAGCATAATTTTGCAGTTAAAGGAACATCGTGTGCATCTTCCTGAGAGGTTTGGAAGTTATCAGTTGGTTGAATGGAAAGTTGAGCCACAAATTAAGCGGACATGGTGGGAGCAACACTTCTGGACTGTTGTGGTGGGAGTCATTATCACATTGATTCTTGGTTTATCCACTTTTGGAGTATGGTTTGTTTGGAAATGGAGACAGAATGCCGTTGGTACATACAAGCCCATTGGTGCCAGAGTTCCTGAGCAGGAGCTGCAGCAACTTACTTTGATCTCAAGCTCACAAGCCTAA 1548 0.4257 MDCNCDHDGVNCVYERRYAEMSSSSGVLGEDIISFGNQSEVVPQRAVFGCENVETGDLYSQRADGIMGLGRGQLSIVDQLVDKNVINDSFSLCYGGMHVGGGAMVLGGIPPPPDMVFSRSDPYRSPYYNIELKEIHVAGKPLKLSPSTFDRKHGTVLDSGTTYAYLPEEAFVAFRDAIIKKSHNLKQIHGPDPNYNDICFSGAGRDVSQLSKAFPEVDMVFSNGQKLSLTPENYLFQHTKVHGAYCLGIFRNGDSTTLLGGIIVRNTLVTYDRENEKIGFWKTNCSELWKRLHIPGAPAAAPIVPTPKSVSAPAPVVSYNNNTTVGMPPTVAPSGLPQEVLPGEFQVGLITFDMSFSVNYSNMKPNFTELAEFIAHELEINASQVHFLNFFSKGNHSVIRWAIFPAESATYISNSTAMSIILQLKEHRVHLPERFGSYQLVEWKVEPQIKRTWWEQHFWTVVVGVIITLILGLSTFGVWFVWKWRQNAVGTYKPIGARVPEQELQQLTLISSSQA* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0758 515 PANTHER ASPARTYL PROTEASES 3 279 IPR001461 GO:0004190|GO:0006508
Vvi18g0758 515 CDD pepsin_A_like_plant 12 285 IPR034161 -
Vvi18g0758 515 Gene3D Acid Proteases 116 290 IPR021109 -
Vvi18g0758 515 ProSiteProfiles Peptidase family A1 domain profile. 1 281 IPR033121 -
Vvi18g0758 515 Pfam Xylanase inhibitor C-terminal 128 280 IPR032799 -
Vvi18g0758 515 Gene3D Acid Proteases 1 107 IPR021109 -
Vvi18g0758 515 SUPERFAMILY Acid proteases 5 290 IPR021109 -
Vvi18g0758 515 FunFam Eukaryotic aspartyl protease family protein 115 289 - -
Vvi18g0758 515 Pfam Xylanase inhibitor N-terminal 3 108 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0758 Vvi-Chr18 7918586 7924155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0758 12 290 Miscellaneous Gene Families AT1G77480 29.097 1.11e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0758 - - vvi:100245410 1039.64