Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0754 ATGGCCATATATTCTCTTAAGAAAAAGGAGAAAGTGACTGCCACCACCACTACCCCAACCGTTTCTCCCACAATGGGCATGGCTTGCACCAATCCTTCTTGTTTTTTCTGTATCATGAAGGAACCAGACTCATCTGTTAGGAGAGTTGGAATCAAGAATTGCTTCAAGGAGATTCCCCTCACGGATGATCAAGAGCATGTTTTGGTGCTGAGTGGTCTCTTCAACATAGCCATGACTCAACCAGATGATCCTGAATTTCCTTCTCTCGGCATCTTCCACTGTATGGCGAGTTTGATTAGCCGATCCATCACTGACAAGGATTGGCTTCTCAGATATCAAAACGTTTATATTCCCTATTACGCAGCTCATGTTATTGGTTCTTACACCATGAACAAGGTCGAGTTCGCAGAGAAAGCTGTGGAATCAGGTGTGATTCCACCTTTGATGGAGCTTCTGAGAGGAAAGCTCACCTGGGTCGAGCAAAGAGTGGCGGTTCGAGCACTGGGTCATCTAGCTAGCTATGAAAGAACCTTCGAAGCAGTAGCGGAATACGAAAAAGAGGTGGTGGAGTTAGCCATGCAGTTGGCTTCTACCTGCCTTGAGGTGGTGTATGCAGAGTTTGTTGGGGTGAATGATGAGAAGGCGAGGTTGAAGTATCACGGCGACTTGCTTACAAGAGGCATTGGAGGGATGGAGATGGAGAATCGGAAGGCGGAGGAGTGGGCTAGCCAACTTCAATGCTGGTCTCTCTATCTTCTAAATTGCTTTGCCTACAAAGAGAGGGCCATAAATCTCATCTGCAGGCAAGAGTTTTTGAAGGATTTGTGTCAAATGTGGGGCGGATTGGTAAATCACACTTCACCTGCAGGGGTGGGACTCATTAGAATTCTGTGTTACCATAAAACTGGAAGAAAAAGCATTGCAGAATCTAGAGAAGTTGTGGAAAGCCTCTGCAATCTCTCGAGATCTTCAGATGATTGGCAGTATGTGGGTGTCGATTGTCTTCTTTTGCTTCTCAGAGACCAAGATACAAGGTACAAAGTTATGGAGATTGCCATCTTGTTTCTTGTTGACTTAGTTGAACTGAGAAGCCTAGGAGGAAGATCATACGTGGGTGAAGCAATCACAAGAACCCTCCTCCTAGATTATAATCAAACCAGATCAAAGCTGAAGAACAACAAAGTTGTTCAAAGAGCACTGGAAGAAATATGGGTTTTGAAGTTAGAGAGGAAGAGGAGAGAGAGAATGATGTCTAACGAAAAAGTAGAAGAGAGAAAGGTCCTAATTAGTCTGATAAAACAACAAGGAAACCAGAGGTGCTGGTTAGGAGAGGTTGAAGAAGCTATAGTCAAGTACAGTGAAGCTCTGGAGTTGTGTCCATCAAGGATGAGAAAAGAGAGAGTTGTACTTTACAGCAACAGGGCCCAATGTCATTTGCTGCTGGGAGACCCAGATGCAGTCATTAGAGACGCAACGCGAGCTCTTAGCCTCTCCATACCTCCAAACTCTCACGGCAAAAGCCTCTGGAGAAGATCACAGGCTTATGACATGAAAGGGTTGGCTAAAGAGAGCTTGATGGACTGCATAATGTTCATCAATGGCTGCATCAACTCTGAGACCACCAAGCGTGTCAAGGTCCCTTACTTCGCAGCCCGTATGATCAGCAAACAAATGGAAGCCACGTGGCTATTTTCCACTGCTCGGTCAAAGTTATCAAGCACACAACCTAACAAAGTACAAGAATCGGACGATGAGGATGAGGGTGGCAATGACGAGCAGCAACTGGATGACATGATGAGGACCATGATGGAGAACAAAAATTTCAAATCTGGTCTGTCCACCATTATAGAAGAACCTTTGATCGGAAAGGGTGAGAGTAAGAGAAAGCTGGAAAGGGCAATGCTAAGAAACAAGGCTGTCGTGCCTCCCTCGACCTAG 1938 0.4546 MAIYSLKKKEKVTATTTTPTVSPTMGMACTNPSCFFCIMKEPDSSVRRVGIKNCFKEIPLTDDQEHVLVLSGLFNIAMTQPDDPEFPSLGIFHCMASLISRSITDKDWLLRYQNVYIPYYAAHVIGSYTMNKVEFAEKAVESGVIPPLMELLRGKLTWVEQRVAVRALGHLASYERTFEAVAEYEKEVVELAMQLASTCLEVVYAEFVGVNDEKARLKYHGDLLTRGIGGMEMENRKAEEWASQLQCWSLYLLNCFAYKERAINLICRQEFLKDLCQMWGGLVNHTSPAGVGLIRILCYHKTGRKSIAESREVVESLCNLSRSSDDWQYVGVDCLLLLLRDQDTRYKVMEIAILFLVDLVELRSLGGRSYVGEAITRTLLLDYNQTRSKLKNNKVVQRALEEIWVLKLERKRRERMMSNEKVEERKVLISLIKQQGNQRCWLGEVEEAIVKYSEALELCPSRMRKERVVLYSNRAQCHLLLGDPDAVIRDATRALSLSIPPNSHGKSLWRRSQAYDMKGLAKESLMDCIMFINGCINSETTKRVKVPYFAARMISKQMEATWLFSTARSKLSSTQPNKVQESDDEDEGGNDEQQLDDMMRTMMENKNFKSGLSTIIEEPLIGKGESKRKLERAMLRNKAVVPPST* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0754 645 Gene3D Tetratricopeptide repeat domain 429 541 IPR011990 GO:0005515
Vvi18g0754 645 MobiDBLite consensus disorder prediction 573 600 - -
Vvi18g0754 645 SUPERFAMILY ARM repeat 110 359 IPR016024 -
Vvi18g0754 645 Gene3D - 98 403 IPR011989 -
Vvi18g0754 645 SUPERFAMILY TPR-like 430 529 IPR011990 GO:0005515
Vvi18g0754 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Vvi18g0754 645 SMART tpr_5 468 501 IPR019734 GO:0005515
Vvi18g0754 645 SMART tpr_5 429 462 IPR019734 GO:0005515
Vvi18g0754 645 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 27 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0754 Vvi-Chr18 7895582 7897711 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0754 - - vvi:100267728 1246.11