Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0742 ATGGATCCATCCATCATGAAGCTCCTCGAAGAAGACGAGGATGAAACAATGCATTCTGGTGCTGATGTGGAGGCACTCACTGCTGCCTTAAACAGAGACATAGAAGGAGATACCTCAACTTCTCAGCCTTCAGATTCTGAAAATGTTTTATCTCAAGGAAGCAATCATACTTCCAGTCAGTTGTTTTCACAGTGGCAAACATCCAGCCAAGATGAAAACACGGACTCTCAAAGTCAACAAGAGCTAAAGAGTTTGCAGCAGCAAGAGCTAAACTCATCTGACTTGGAGCAAAAGCAGCATGGATCTGGTGTTGAGAATCAGCAACAAGTTGATGCCTCACATGACATAAATCGCCTCCCTTTGCAACAGAAACAATCCCAAGATGATCCTCAACAGCTGCAGTCAGAACCAAATCCCATACAGTTTTCTCAAGCACCTGGGATACAGATTTCAGAAAAGAATTCTGTCCAGATTCCAGAACCAGACAGAATTCATAATCCAGATAAACAGCATCAATTCCCAGAATTACAGAAGATAAATAATCAACAGGGAATAGCCACTGAGCAGGCAAGTAACTCGGGGAATCAAAATAAACATATACCATTTGGAATGTTGCTTCCATCTATAATACCCCACCTGGATAAAGACAGAGCCTTGCAACTTCGAACTCTTTATGCTAAACTGAAGAAAAATGAAATCCCCAAACTAGCATTCGTCAGGCTTATGAGAGGTATCGTAGGAGACCAGATGCTCAAGTTGGCAGTAATGAAACTGCAACAATCACCGACCGGACCCAGCCAATTCCAATTACAGTCTCAAGCTTCAGCGCTGCAACAACATTTGAAAACACCATCCAGTATTGGCTCACAGTTCTCTGATCCTCATTCATTTTCACAACTTCATCAGAAGGGCCAGAGCACTCCTGCAGACTCATCTCATATGCCCTCTTCAGCCATGAAAGTGCAGACTGATTCAAGCTATCCAACCACTGAAACCAATTCTCAAAAACCCCGGGAGATGGAACGTCAGTCAGATTCACATGGAATGCAAGGGAGCCAAATGTCTTCTTCCAGCTTGAGTTCTGCCAAACAAGAAAGGGAGCACTCTGTGATGCCAATGCAAGGTCCTAACAAGCAGCAGCTACAGCAACAGCAACAGCAGCACCAACAGCAACAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAGCAGCAACAACAACAACAGCAGCAGCAGCCTCAGCAACAGAAGCAGCATCTGCACTTTTCACAGACACCTTTTACTATGTATGGGAGTGCTGGTGGTAATTATCACTCATATACAGGCACTAATGTTAATACTTCAGCAACATCTACAAAACAGCAACCTCATGATTCCCAAATGAGGCAAGTGCCTCTTCACCAAAACATTGGTTCAACTCAGATGGGAGGGACAAGTCAAGCCATGAATCCAATGAGTGTGCCCAAATTTGAGAGGCAGAGTTCTGTTAATGATCCCAAGAGAGTGCAGGGTGGATCTCTTCCTCATCCATCAAACAGTTCGACATTGCAACAGAGTTCTGTTCCTTGGCAATCATCAACAAATAAAGAGCAGATCTCATCAATGGCATATGTAAAGCAGGAACCAGCTGATCAAACTAATGAGCAGCAGCAAAAATCCCAGCTGTCTACCCCACAGAGTTTGTCTTCTTTCCCTGCTGTACAGGTTGAAAAGGGAAATGCCATTCCAGGAATTTTAAAAGATGAATCTTTGGAGAAGCAGGCTTCTAGAATTGGTTTCTCATCATCTATGAGTATGTTGCCTCCAAATTCAGTTTCATCTTCCATGGGGACACATCTGGACCCAAATGTCACGCTAGGCTCCCGAATCCCATCTGTTACTTCTCCTGTTGGAATTAATACAAGGACACCCCCAAAAAAACCTTCTATTGGCCAGAAGAAACCACTTGAAGCACTTGGTTCTTCACCGCCTCTGCCAAGTAAAAAGCAAAAAGTATCTGGAGCCTTTCTGGATCAAAGCATTGAACAACTGAATGATGTTACTGCTGTCAGTGGAGTTAACCTGAGGGAAGAAGAAGAGCAGTTATTTTCCGGGCCCAAGGAGGACAGTCGAGTCTCAGAAGCATCTCGAAGGGTTGTGCAAGAAGAAGAAGAAAGGCTAATTTTGCAGAAAGCTCCTCTTCAAAAAAAATTAGCAGAAATCATGGCTAGATGCAGTTTAAAGAATATAAGCAATGATGTGGAGCGATGCTTATCATTGTGTGTTGAAGAAAGATTGCGTGGATTTATAAGTAATTTAATCAGACTGTCAAAACAGCGAGCTGATGTTGAGAAACCAAGACATCGGAGTATTATTACCTCAGATATTCGACAACAAATCTTGATAATGAACCATAAGGCCAGGGAGGAATGGGAGAAAAAGCAGGCTGAAGCAGAAAAGCTTCGTAAACTCAATGAGCCTGAGGGTAGTACTGGGGTTGATGGTGACAAGGACAAGGATGAAGGTCGTGTAAAATCACTCAAGGCAAACAAAGAGGAGGATGACAAAATGAGGACAACAGCTGCAAATGTTGCTGCTCGAGCTGCTGTTGGAGGAGATGACATGTTGTCCAAATGGCAACTTATGGCTGAGCAAGCTCGCCAGAAACGTGAAGGAGGAATTGATGCAGCCTCTGGTTCTCAACCTGGTAAAGATGCAAGCCGCAAGCTGTCTTCAACCTCTGGAAGAAATGCAAGGGAAAATCAAGAAGCAGAAAAAAGGGGCTACTCAACTGTTGTTTCTTCACCTGGTGGTGTTAGAAAATTTGGAAGGAACAATGCCATAGTGCCCCAAACTAGGGTAGCTCGTAATATCACTGTTAAGGATGTCATTTCAGTATTGGAAAGGGAACCACAAATGTTGAAATCTACTCTGATATATCGCTTGTACGAAAAAATGCGCTCTGGTGCTGCAACTGAATAA 2961 0.4363 MDPSIMKLLEEDEDETMHSGADVEALTAALNRDIEGDTSTSQPSDSENVLSQGSNHTSSQLFSQWQTSSQDENTDSQSQQELKSLQQQELNSSDLEQKQHGSGVENQQQVDASHDINRLPLQQKQSQDDPQQLQSEPNPIQFSQAPGIQISEKNSVQIPEPDRIHNPDKQHQFPELQKINNQQGIATEQASNSGNQNKHIPFGMLLPSIIPHLDKDRALQLRTLYAKLKKNEIPKLAFVRLMRGIVGDQMLKLAVMKLQQSPTGPSQFQLQSQASALQQHLKTPSSIGSQFSDPHSFSQLHQKGQSTPADSSHMPSSAMKVQTDSSYPTTETNSQKPREMERQSDSHGMQGSQMSSSSLSSAKQEREHSVMPMQGPNKQQLQQQQQQHQQQQQQQQQQQQQQQQQQQQQQQQPQQQKQHLHFSQTPFTMYGSAGGNYHSYTGTNVNTSATSTKQQPHDSQMRQVPLHQNIGSTQMGGTSQAMNPMSVPKFERQSSVNDPKRVQGGSLPHPSNSSTLQQSSVPWQSSTNKEQISSMAYVKQEPADQTNEQQQKSQLSTPQSLSSFPAVQVEKGNAIPGILKDESLEKQASRIGFSSSMSMLPPNSVSSSMGTHLDPNVTLGSRIPSVTSPVGINTRTPPKKPSIGQKKPLEALGSSPPLPSKKQKVSGAFLDQSIEQLNDVTAVSGVNLREEEEQLFSGPKEDSRVSEASRRVVQEEEERLILQKAPLQKKLAEIMARCSLKNISNDVERCLSLCVEERLRGFISNLIRLSKQRADVEKPRHRSIITSDIRQQILIMNHKAREEWEKKQAEAEKLRKLNEPEGSTGVDGDKDKDEGRVKSLKANKEEDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGIDAASGSQPGKDASRKLSSTSGRNARENQEAEKRGYSTVVSSPGGVRKFGRNNAIVPQTRVARNITVKDVISVLEREPQMLKSTLIYRLYEKMRSGAATE* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0742 986 MobiDBLite consensus disorder prediction 263 334 - -
Vvi18g0742 986 Gene3D Histone, subunit A 722 767 IPR009072 GO:0046982
Vvi18g0742 986 MobiDBLite consensus disorder prediction 621 665 - -
Vvi18g0742 986 Coils Coil 378 412 - -
Vvi18g0742 986 CDD TAF4 672 974 IPR007900 GO:0005669|GO:0006352
Vvi18g0742 986 MobiDBLite consensus disorder prediction 897 911 - -
Vvi18g0742 986 Pfam RCD1-SRO-TAF4 (RST) plant domain 196 260 IPR022003 -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 877 930 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 122 142 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 263 387 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 814 852 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 1 109 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 346 387 - -
Vvi18g0742 986 Pfam Transcription initiation factor TFIID component TAF4 family 677 975 IPR007900 GO:0005669|GO:0006352
Vvi18g0742 986 Coils Coil 797 819 - -
Vvi18g0742 986 FunFam Transcription initiation factor TFIID subunit 4B 720 767 - -
Vvi18g0742 986 ProSiteProfiles RST domain profile. 193 264 IPR022003 -
Vvi18g0742 986 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 415 980 IPR045144 GO:0005669|GO:0006352
Vvi18g0742 986 MobiDBLite consensus disorder prediction 621 640 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 33 109 - -
Vvi18g0742 986 MobiDBLite consensus disorder prediction 426 563 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0742 K03129 - vvi:100252311 1771.13