Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0732 ATGTCGGCCGAGCAGCCCCTGAAGAAGCGAAAGCTGCATGATCATGTTTCCGAACCTCCACCGGAGCCGCAGCCGCCGCCGCAAACCGCTGCTCAGCAGCGCTCGGCAACTCCACCGCTGTCGCAAGAAGAAATTATGCGGAGACGAAGAAACAGAGAAGAGATTCGTAATGTGTACGAATGCTACAAGCGAATTAAGTCGTGTATCGCTCATGAAGATGCTCGCTTAATGCCGGAACTCGAGCAGGCCTATCTCTCTCTCATCACTGCTTCCAGAGGTTGCACAAGTGCGCAGCGGATTGTGGCTGACTTTGTTCCTCGATATGCATCATACTGTCCAACTGCTCTTGAAGCTGCTGCTAAAGTTGTTATCAATATGCATAAATGGAGCTTGACAACAATAAATAGAGGAGAGGATTCTAATGGAGTTGCATTTGAGACTGCTAAAGCCTGTATCTTTGGTCTAGGTGATATCTGTTCTGCTGCTGCATCAGAGGCACCAACATCATCTGTTATCCGAGGCATATGTTCTGCAGTTTTTCTGAATGTGCTAACCTTCTTCTTATCCTCATTTGAGGGGAAGGATATTTTTCAGATTGTTGATAAGGAAACATTGAAGATACATGATTCCCCTGAGTTATTTCCCAGATTGAAGCAAAAGTTCTCAGATGAAGATGGATCTCCATTGTTAAAATTACCCAAGTTTAGTGCACTCAGTTTCCTTAAGATTTTCTTTTCTTGTTCCAAAAAATTGCTTGCCGCTTGTTTTGAGCTGTTCAACTCCACCACTACAGAGGGAATCAACAAAGAAGGATATTTCTTTCTAAGTCAGGTGACAAGCAGGCTTGATGCTGATGATGCAACTCATACTTCGAATACAACAATTGATGGACCTAAATCATGTCCAGGTTCTGTTGAAACTAGCACTGAAGGCAATAAAGTTAGTGATGAGGGGTTTGTAAGAGATGGCAACCACGTTCTGGGGAAGGCATCTCCTATGTCAAATAGCTGCTTGCTGAGACTGGTTCTTGACAAAGATCCATCATTGAGAAGTTGGATGTTCGTGAAATATAAGAAATTATGTAAATCGGCATCTTCTCAAGTTGTATCAGAATTCACATCTGCTCTAGAAAGAATCTTTGAATCTTTTACAGAACTAGCGCAGGTAGAAGACAGTCAAGTGGATAGCGATGAGGATACTTCTGATCCATCCAAATATATTAATAGACAGTATTTGGTGCCTCGGATCTCTAATAAGTGTGAAGGCTCTAGTGAAATATCCGGAAAAGATTGTACATCAAGAGCTCATGATGTGACTGGTGATGATGGTTTGAAAGACAAATTTTCAGGTCTATATCTGAAACCTCGCAGCTCAGTGGGTCCCATGGAGGCCGACATCCGCTCAAGTACAAGTTCTAATCATGATAAAGGAGGCTCAAGGTCCATGGACTTTGAGACTGGTGAGCATGGAGATTTATCACATGGCAGGTCTTCCATGCCTAGGGACCTGCTGAACAACCATTTGCATTCTCCTGTCACAAGAAAATCTTTTGAGTTCAGGACTGATCCATTTGAAGGTAGAAGCCACCTTGTCCAAGCTGAGAAGAATCAAGTTTCAAACATGGAGTTCAGCTTGCCTACCTTGAGATCTTCAAGTGGAGTCGTAACTAATGCTGTGGCATCTCCTAAACATCAGATGACAATATCATATTCTGCGACAAGTAGTCAAACTATTTGGTACTTTGATGGGGACCCTGCTGCCATGGATGTTTTCTCAGCTTCTAAACAGCTCTGGCTAGGTTCCATATCCCCTGATGCATCTGAAGCTCTTGTAAGGTTTCAGGTTGAGAGGTTTGGTCCTATAGAACATTTCTTTTTCTTTCCAATTAAAGGATTTGCCTTGGTTGAGTACAGAAACATTATGGATGCTATAAGGGCTCGGGAATATATGCAGGGGCATTCCCCTTGGCATATAAAGTTCTTGGATATAGGATTGGGAACCAGAGGAGCTATTAATGGTGTTGCAGTTGGTTCTAGTTACCATGTTTATGTTGGAAATGTTTCAAGCCAATGGGCAAAGGATGAGATATTGCATGAATCAATGAAAGTGATTTACAAGGGTCCTCACATGGTTACTGATCTTACTGGTGGGGAGGCATTATTGATGGAATTTGAAACACCTGAAGAAGCTGCCTCTGTAATGGCACACCTGAGGCAGTATCGCAGGGAAAATGGTAACCGCTTGATGCCTTTAAATTCTGTAACTAATGTTGCACGAACTCATTTGGATGGAGCAAGATCTATGAGTGGCCCTATTCCTGTTGACCTTAGAGGCAGTAATGCTGGAAACATGTCTAATAATATTGTTGGATCGCCTTATGCTCAAACAGTGCCTGAGAGCCCTGCTGAAAGCTCTAGGACAAGGATGTCTCATCTTTCTTCTTTAATTTCTACATTACGTGCAAAATATAACATCACTCAAAGCTCAAGTTATTTTGACAACCATATATCTGGGGACTACCATGCTGCTCCAATGAGGGAAGAAGATAGAGCTCCAACAAGCACTGTCTGGATTAACCTGCCAAATATTAGCCCTCCATTCCTCACAGATGATGAGCTTATGACCATGTGCAATCTTGCTATTGGCAATGTAGGGTCTGTTGTCAGGCTGGCACGAGCAAATATGCAGATGGGTTGTTGCTGGTTTATTGAATGCAGCAATGTAGATGCTGCAGTTACCGTCTTAAAGAACCTGCGGGGTTGTCCTGGGATGTTCTTCCAGATAGAGTTCAGTCAACCTGGGAAACCTCATGCTTTCACAAAGAAATCCGAGAGCAGCACTCTGGAGCTAGTATCCCCTAGAGTGAAACTGGAAAATCATGGGACTGCATTACAAAGCGGGCATGGATTTCAGTCTAACTGGGCTGTTTCTGGATCTACAGAGATGCCTGAAGTTGGAGTGAGAAAAACTGATGGCTATGACAGTAGTATGGTGGTGGGTCTTCCATCAGGAGGTCATGCTGGTTCTGGTGCTGCTGAACAAATGTGGATGTATAAGAAACCTGAAATTGAACTTCATTCTGGACAAGGAAATATTCCCTGCATGCCTATAGCAACACAGGGACCTAATATTGCACCACCACAAGGTCCACAACAAATTCAAGCGCCTCCATTCATGCGACCTGTTTACCTTCCTCCAAGCAGTTCATGGGATACACGATGTTTAAATCATCATTTGCCATTGAACCCAACCGCACCAGGTGTTATGCCTTATAACCTTCACGGTAATGCTGTTGCAGCTCCTTTCTTACCTGCTTCTGTGACACCACTTGCACAGATGCAGGGAAACTCAATGCAGCATTTTGATCAAATGTTTTCCCTTCCTGTGGTACCACCACCTTTATCATCCCTACCACCTCCTTTGCCTGGCATGCCACCTCCATTACCTCCATCTCCACCTCCTCTGCCTCAGTCTCTGCCACCTCTAGTTCCCCCTCCACCAAGTTCTCCCCCTCCACCCACACCCATTGTGTTGTCCAATTTGCAATACCAGTGGCAAGGTACATTATCTAAAAGTGGAGTTAACTACTGTACCATAATCGCGCATAGAGTGGATTCGGATATTTGCAAGTATTTGAGTAACATGTCTGAACCTACAGAGTGGCCGGCTAAATTGGATATGACAAAAAGGACTGATTTCCGGCATGTGAAATCAACATTTACTGGCACCCCACCACATAAAAGGGAAGTATGCCAGCTGCGCCCTTTTTCTGCCAGTGACCATAAAGGCTTTCAGGATTTCATAGCATACTTGAAGCAGAGGGATTGCGCAGGAGTAATTAAGATTCCAGCTGTGAAATCAATGTGGGCAAGGCTACTCTTTATTCTTCCCTACTCGACAGATGCATGTTCTATGCTTTCTATTGCACCAAATCCTTCGGATTGCTTAATTGCTGTGGTTTTGCCAAAAGAGACCAGCTTTGAATCCACGTGA 3993 0.4393 MSAEQPLKKRKLHDHVSEPPPEPQPPPQTAAQQRSATPPLSQEEIMRRRRNREEIRNVYECYKRIKSCIAHEDARLMPELEQAYLSLITASRGCTSAQRIVADFVPRYASYCPTALEAAAKVVINMHKWSLTTINRGEDSNGVAFETAKACIFGLGDICSAAASEAPTSSVIRGICSAVFLNVLTFFLSSFEGKDIFQIVDKETLKIHDSPELFPRLKQKFSDEDGSPLLKLPKFSALSFLKIFFSCSKKLLAACFELFNSTTTEGINKEGYFFLSQVTSRLDADDATHTSNTTIDGPKSCPGSVETSTEGNKVSDEGFVRDGNHVLGKASPMSNSCLLRLVLDKDPSLRSWMFVKYKKLCKSASSQVVSEFTSALERIFESFTELAQVEDSQVDSDEDTSDPSKYINRQYLVPRISNKCEGSSEISGKDCTSRAHDVTGDDGLKDKFSGLYLKPRSSVGPMEADIRSSTSSNHDKGGSRSMDFETGEHGDLSHGRSSMPRDLLNNHLHSPVTRKSFEFRTDPFEGRSHLVQAEKNQVSNMEFSLPTLRSSSGVVTNAVASPKHQMTISYSATSSQTIWYFDGDPAAMDVFSASKQLWLGSISPDASEALVRFQVERFGPIEHFFFFPIKGFALVEYRNIMDAIRAREYMQGHSPWHIKFLDIGLGTRGAINGVAVGSSYHVYVGNVSSQWAKDEILHESMKVIYKGPHMVTDLTGGEALLMEFETPEEAASVMAHLRQYRRENGNRLMPLNSVTNVARTHLDGARSMSGPIPVDLRGSNAGNMSNNIVGSPYAQTVPESPAESSRTRMSHLSSLISTLRAKYNITQSSSYFDNHISGDYHAAPMREEDRAPTSTVWINLPNISPPFLTDDELMTMCNLAIGNVGSVVRLARANMQMGCCWFIECSNVDAAVTVLKNLRGCPGMFFQIEFSQPGKPHAFTKKSESSTLELVSPRVKLENHGTALQSGHGFQSNWAVSGSTEMPEVGVRKTDGYDSSMVVGLPSGGHAGSGAAEQMWMYKKPEIELHSGQGNIPCMPIATQGPNIAPPQGPQQIQAPPFMRPVYLPPSSSWDTRCLNHHLPLNPTAPGVMPYNLHGNAVAAPFLPASVTPLAQMQGNSMQHFDQMFSLPVVPPPLSSLPPPLPGMPPPLPPSPPPLPQSLPPLVPPPPSSPPPPTPIVLSNLQYQWQGTLSKSGVNYCTIIAHRVDSDICKYLSNMSEPTEWPAKLDMTKRTDFRHVKSTFTGTPPHKREVCQLRPFSASDHKGFQDFIAYLKQRDCAGVIKIPAVKSMWARLLFILPYSTDACSMLSIAPNPSDCLIAVVLPKETSFEST* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 1136 1175 - -
Vvi18g0732 1330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 595 689 IPR000504 GO:0003723
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 478 496 - -
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 1 49 - -
Vvi18g0732 1330 CDD RRM_SF 597 654 - -
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 455 506 - -
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 463 477 - -
Vvi18g0732 1330 SMART rrm1_1 596 659 IPR000504 GO:0003723
Vvi18g0732 1330 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 2 1281 - -
Vvi18g0732 1330 SUPERFAMILY RNA-binding domain, RBD 584 654 IPR035979 GO:0003676
Vvi18g0732 1330 Gene3D - 586 667 IPR012677 -
Vvi18g0732 1330 CDD SPOC_FPA-like 1184 1322 - -
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 1 18 - -
Vvi18g0732 1330 Pfam SPOC domain 1179 1322 IPR012921 -
Vvi18g0732 1330 MobiDBLite consensus disorder prediction 289 314 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0732 K18667 - vvi:100259158 2521.5