Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0729 ATGAATTTACAAAACCCTAGGACGCCTGAATTTTACTTCGCCTGTGTTGGTCGCGTGGAATCGGAATTGGAGTCCCCAGTTCCTCTTCTTCCGTTTGGTAACTCTCAGCGTAAAAAGGTTTCACTGTTGGATAGTGACGATGATGATAGTGCGAGTTCTTCGTCCACTTCCCGGTCAGATCTTGTGCTGGCACAAGGAATTGAGGATGTCCAGCTTGATAAAGAGAGTTCACTAGATCAGGCTTTGGATGCTTTATATGAAAAAAGGGGAACCACGAGAGAAAGGGCCTTGTCATCAATAATTGAGGCTTTTAGCAGCAACCTGCAGCATCTGTTTGTGGAAAAGAAATTCGCTACATTGCTGCATCAGTGTTTGAATTCCATCAAGCGAGGGTCTGCTAAAGAGGCATCTTTAGCATGTCATGCAATTGGATTGCTGGCTTTGACTGTTGGTCATGGGGATAATGCACATGAGATATTGGAAGAATCAGTTCCTCCTATTTCACAGGCTCTCAAATCTTCATCTGAATCATCAAAGATATCATGGTTATTGGAATGCTTGGCTATTGTCACCTTCATTGGTGCAAATGATCCAGAAGAAACAGAAAGATCAATGCAAATTATGTGGCAATTACTTCATCCAAAATTGGGTTCTAATGTGGTTGCCAGAAAACCTTCAGCAGAGGTAATAACAGCAGTGGTGTCTGCTTGGTCGTTTCTTCTTACAACCATGGATGGGTGGAAACTGAATCCTAAAAATTGGCAAGGGTCAATTTCTTATTTTTCTAGTTTGCTAGATAAGGATGATCGATCTGTACGCATTGCAGCTGGTGAAGCATTGGCTCTTATTTTTGAAGTAGGAAGTTTAGAGAAGTTCTTTATCGAACCTAAAGGTCCTAGTGACAGCTCAATTCATGAAGAGAATATTCATCGGGAAGGATTTACACACATACAAGGACTTAAAGGGAAAATTCTAAATCAAGTGAGAAACCTTTCAGTGGAAGCAGGTGGTAAAGGTTCTGTGAAGAAAGACCTTAACAGCCAGAGAAACTCATTTAGAGATATATTAGAATTTCTTGAGGGTGGTTACTGTCCTGAAACCTCAATGAAAATTGGTGGAGATTCACTGAACACATCAACATGGTCTCAACTGATACAGTTAAACTTTCTGAAGCACTTTCTCAGGGGCGGATTTGTTAAGCACATGCAGGAAAATGAATTTCTTCATGAAGTCTTTGGTTTCACACCAAAAAGAAAGCATCTTTCGGGCAGTGAGCATCATTTATCTAGTGGTGAAAAGAGGATGTACAAATCACCAAACTCAGTGGTCAATAAGGCAAGAACTCAGTTGCTGAACAAACAGCGGATGTTGTCCCAGGGTAGAAACGCAGGCCATTATGCAGTTGGTTTGGGTGATGAAGAGCTGTAG 1428 0.4139 MNLQNPRTPEFYFACVGRVESELESPVPLLPFGNSQRKKVSLLDSDDDDSASSSSTSRSDLVLAQGIEDVQLDKESSLDQALDALYEKRGTTRERALSSIIEAFSSNLQHLFVEKKFATLLHQCLNSIKRGSAKEASLACHAIGLLALTVGHGDNAHEILEESVPPISQALKSSSESSKISWLLECLAIVTFIGANDPEETERSMQIMWQLLHPKLGSNVVARKPSAEVITAVVSAWSFLLTTMDGWKLNPKNWQGSISYFSSLLDKDDRSVRIAAGEALALIFEVGSLEKFFIEPKGPSDSSIHEENIHREGFTHIQGLKGKILNQVRNLSVEAGGKGSVKKDLNSQRNSFRDILEFLEGGYCPETSMKIGGDSLNTSTWSQLIQLNFLKHFLRGGFVKHMQENEFLHEVFGFTPKRKHLSGSEHHLSSGEKRMYKSPNSVVNKARTQLLNKQRMLSQGRNAGHYAVGLGDEEL* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0729 475 Pfam Interferon-related developmental regulator (IFRD) 52 360 IPR007701 -
Vvi18g0729 475 Gene3D - 82 293 IPR011989 -
Vvi18g0729 475 Pfam Interferon-related protein conserved region 405 459 IPR006921 -
Vvi18g0729 475 PANTHER INTERFERON-RELATED DEVELOPMENTAL REGULATOR 37 466 IPR039777 -
Vvi18g0729 475 SUPERFAMILY ARM repeat 73 290 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0729 Vvi-Chr18 7636801 7650323 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0729 - - vvi:100267843 832.787