Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0722 ATGCCTGGAAAGATTTATAGGACTGCAATGTCTTCACTGGCGACAGCTCACATGCTTATTGCTGCTGGAACCGAAGATGTTCAAGTTCGCCTTTGTGATATTGCTTCAGGAGCTTTTGCTCACACTTTATCTGGTCATCGTGATGGTGTAATGACAGTTGAATGGTCTACTTCTAGTGAGTGGGTTTTGGTAACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATCAGACGTGCTGGATGTTTTCTTGTTTTAGATCAGTCCCAATCACAGCTTGGTAGACGCCCACCTCTCCTTGAATGCTCTACTGCGAATAAGGCTCCAATGTCAAAGTCCTTTCCAGCAAGCCAAAGTGTAAATGTTAGATCCCGTGCACCACAAAGGAAATTTGCTTATGGGAATGGTTCAAAACAGTCAGCTACTGGTAGAACTTCAAGTCAAGCCAAGGGATTGGTCAGGCAGAGACTACATCCAGGGATGTTATCTAGTCAGGACCGTGCCACTTCTCATTATGGTGCTGTTACTGGATTAAAAGTAACTGACGATGGCATGTATCTTCTGAGTGCAGGTTCTGATTCAAGATTAAGGTTGTGGGATATTATGTCCGGCTGCAACACACTAGTGAACTTTGAAACTGTGCGGCTACAAACCAGCAAAGCAATGCAGTTGGCTATAACTAATGATTCAGCACTTGTCTTTGTTCCTTGCATGACAGCCGTAAAAGCATTTGATGTCTGGTCAGGTAAGACAGCCATGACATTTCGTGGCCACTACGAATATGTGAATTGTTGCTGGTTAAGCTTGCAGGATCAGGAATTATATACAGGCGGCAATGATAGACAAATTCTTGTTTGGTCACCATCTAGATTGAATTTTGATGAAATGGATCATGGCAGCAGGGAAGAGCCGATTCATGCACAGGATCAGGATAATTGGAGCGATTGA 948 0.4399 MPGKIYRTAMSSLATAHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSQSQLGRRPPLLECSTANKAPMSKSFPASQSVNVRSRAPQRKFAYGNGSKQSATGRTSSQAKGLVRQRLHPGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAGSDSRLRLWDIMSGCNTLVNFETVRLQTSKAMQLAITNDSALVFVPCMTAVKAFDVWSGKTAMTFRGHYEYVNCCWLSLQDQELYTGGNDRQILVWSPSRLNFDEMDHGSREEPIHAQDQDNWSD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0722 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 287 IPR001680 GO:0005515
Vvi18g0722 315 Pfam WD domain, G-beta repeat 170 200 IPR001680 GO:0005515
Vvi18g0722 315 Pfam WD domain, G-beta repeat 41 76 IPR001680 GO:0005515
Vvi18g0722 315 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515
Vvi18g0722 315 ProSitePatterns Trp-Asp (WD) repeats signature. 63 77 IPR019775 -
Vvi18g0722 315 SUPERFAMILY WD40 repeat-like 17 289 IPR036322 GO:0005515
Vvi18g0722 315 SMART WD40_4 36 76 IPR001680 GO:0005515
Vvi18g0722 315 SMART WD40_4 248 287 IPR001680 GO:0005515
Vvi18g0722 315 SMART WD40_4 161 200 IPR001680 GO:0005515
Vvi18g0722 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 78 - -
Vvi18g0722 315 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 204 - -
Vvi18g0722 315 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 315 IPR042238 GO:0006283
Vvi18g0722 315 MobiDBLite consensus disorder prediction 110 150 - -
Vvi18g0722 315 MobiDBLite consensus disorder prediction 133 150 - -
Vvi18g0722 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Vvi18g0722 315 PRINTS G protein beta WD-40 repeat signature 63 77 IPR020472 -
Vvi18g0722 315 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Vvi18g0722 315 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Vvi18g0722 315 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 78 IPR001680 GO:0005515
Vvi18g0722 315 Gene3D - 135 290 IPR015943 GO:0005515
Vvi18g0722 315 Gene3D - 1 123 IPR015943 GO:0005515
Vvi18g0722 315 FunFam Excision repair cross-complementation group 8 148 290 - -
Vvi18g0722 315 ProSitePatterns Trp-Asp (WD) repeats signature. 187 201 IPR019775 -
Vvi18g0722 315 MobiDBLite consensus disorder prediction 110 125 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0722 19 83 Miscellaneous Gene Families AT5G08390 32.308 1.47e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0722 K10570 - vvi:100247086 644.425