Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0708 ATGGGCTTCTTGGCCGCCAGTCTCAGAAAGTCTTCTCGACTCTGCCGTCCTCCTTTTTCAATACCTCTCTGTTTTTCTTTATCAAACCAGCTTTTCTTACTACCCTACTCATCCCCTATTGGAACACACCTTCATCGCTTTATTTGCTCCGATGCTGACCCTGAAACCCTAATCCCACCGCCCCAATCCCCAAATCCTAAAACCCCAACCCCTCTACAAATGCAATTCGAATCGTGGATCCACATGCTCAAACCCGGTTTCTCACCCTCCGATGTCGACGAGGCTTTGCGAGCTCAATCGGACCCCGATCTTGCCCTCGACATTTTTCGGTGGACAGGTCAACAGCGCGGCTACAGGCACAACCATGTCACCTATCTCACTATGATAAAAATTGCTGTCTCCGGTAAGCGCTTCAGGCATGCCGAAACCCTAATTGAGGAAGTCATTGCCGGTGCATGCTCTGTCAGTGTGCCCCTCTACAATTCTATTATTCGATTTTGTTGCGGTCGTAAATTTCTTTTTAATCGTGCGTTCGATGTTTACAAGAAAATGTTGAATTCCGAGGATTGTAAGCCCTCTTTGGAAACCTACACATTGTTGTTGAATGCCCTTCTTAGGAAATTCAACAAATTGACTGTATGCTATGTTTATTTGCATGCTGTCCGTTCATTAACCAAACAAATGAAGGTGTCAGGCGTAATACCAGATACATTTGCTTTGAATATGATTATTAAAGCATACTCCAAGTGTCTTGAAGTTGATGAAGCAATTAGGGTTTTTCGTGAAATGGGTTTGTATGGTTGCGAGCCAAATGCCTATACTTATGGCTATATTGCCAATGGGTTGTGTGAAAAGGGGAGGGTGAGTCAGGGTTTGGGGTTTTATAGGGAAATGAGGAGTAAAGATTTGGTGCCTAGTAGTAGTACCTACGTGATTCTGATTTGTAGTCTTTCAATGGAGAGGAGATTTGAAGAAGCTACGAAGATTTTGTTTGATATGTTGGGTAATTCTATGGCTCCTGATTTGTTAACTTATAAAACACTCTTAGAAGGATTGTCCAGGGAAGGAAAGTGCAATGATGCTTTTGAACTTCTTGAAGATTTGAGGAAGAAGGATGCTTGGATGGGAGAGAAGACTTACAAGACCTTGGTGAAAGGGTTGCATTTTTTGAGTCAGGAGTAG 1182 0.4323 MGFLAASLRKSSRLCRPPFSIPLCFSLSNQLFLLPYSSPIGTHLHRFICSDADPETLIPPPQSPNPKTPTPLQMQFESWIHMLKPGFSPSDVDEALRAQSDPDLALDIFRWTGQQRGYRHNHVTYLTMIKIAVSGKRFRHAETLIEEVIAGACSVSVPLYNSIIRFCCGRKFLFNRAFDVYKKMLNSEDCKPSLETYTLLLNALLRKFNKLTVCYVYLHAVRSLTKQMKVSGVIPDTFALNMIIKAYSKCLEVDEAIRVFREMGLYGCEPNAYTYGYIANGLCEKGRVSQGLGFYREMRSKDLVPSSSTYVILICSLSMERRFEEATKILFDMLGNSMAPDLLTYKTLLEGLSREGKCNDAFELLEDLRKKDAWMGEKTYKTLVKGLHFLSQE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0708 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 371 IPR002885 -
Vvi18g0708 393 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 92 387 - -
Vvi18g0708 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Vvi18g0708 393 Pfam PPR repeat 308 336 IPR002885 -
Vvi18g0708 393 Gene3D Tetratricopeptide repeat domain 88 212 IPR011990 GO:0005515
Vvi18g0708 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Vvi18g0708 393 NCBIfam pentatricopeptide repeat 160 193 IPR002885 -
Vvi18g0708 393 NCBIfam pentatricopeptide repeat 273 306 IPR002885 -
Vvi18g0708 393 NCBIfam pentatricopeptide repeat 309 341 IPR002885 -
Vvi18g0708 393 NCBIfam pentatricopeptide repeat 240 272 IPR002885 -
Vvi18g0708 393 Pfam PPR repeat family 340 387 IPR002885 -
Vvi18g0708 393 Pfam PPR repeat family 157 205 IPR002885 -
Vvi18g0708 393 Pfam PPR repeat family 235 283 IPR002885 -
Vvi18g0708 393 Gene3D Tetratricopeptide repeat domain 213 392 IPR011990 GO:0005515
Vvi18g0708 393 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0708 116 387 Glycosyltransferase AT1G05670 23.897 2.14e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0708 - - vvi:100264218 782.326