Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0698 ATGCTCGAGGCTTATCGGAATAGCTCGTTAGATTGGAATCCCTCCCCAGTTGTAGCCCTAGCAACCAGCGTCGACGACTCGCAAGTTGCCGCCGCTCGGGAAGACGGTTCCGTTGAGATATGGCTCGTCTCTCCCGGCTCCGTCGGCTGGCATTGTCAACTGACTATACACGGAAACCCTAATTCCAGAGTTTCATCGCTTGTTTGGTGTCGCTCTGGTTCGAAAAACATGCCTTCAGGTCGTTTGTTTTCTAGCAGTATTGATGGATCAGTTTCAGAGTGGGATCTTTTCGACTTGAAGCAAAAGATTGTGTTAGATTCAATTGGGGTCTCGATATGGCAGATGGCTGCAGCACCTTACAATGATGCATGTCTTACTCAGCATGAGTTACAACATGTCGGGAATGGATATTTAAATGATAAATTAAATAATGCGGAGGATGAAGATAAGGAGACCAGTGAAAGCGAAGATGATGATTCGGTTGAACTCCATGAGGTATCGGTCTTTGAAAATCCACGTGTAGCGATGGGTTGTGATGATGGTTGTGTGCGAGTATACAGTATTACCATTTCAGATGAGTTAACTTACAATAAATCATTGCCTAGGGTCAGTGGGCGAATATTAAGCGTGACATGGAGTCCCAACGCAAGTATGATATACTCAGGGAGTAGTGATGGGTTTATAAGATGCTGGGATGCTAAATTGGCTCATGAGATTTACAGAATAACAGTTGGGCTTGGAGGGTTAGGGAGTGGACCGGAACTTTGTATATGGTCATTACTTGCCCTGAGGTGTGGTACACTAGTTAGTGGAGATAGCAATGGTAGTGTTCAGTTTTGGGACAGTCAGCACGGAACTCTTTTGCAGGCACATTCTTTGCACAAGGGTGATGTCAATGCTCTGGCAGCAGCGCCTAGTCATAACAGGGTGTTCTCTGCTGGTTCTGATGGTCAGGTTATTCTTTATAAACTCTCTAGTAGTGATGACACTTCTTCAAAGGGGATAAAGAAATGGATCTATGTTAGTTATGTAAGAGCTCATACGCATGACGTCAGGGCCTTGACAGTTGCAGTACCCATCAGCCAAGAAGATCAATTGGCCGATGAAAAGGATAAAAGGATTCATTGTAAAGAAAAGACCGTTGATAAAAAGGATAAAAGAATTCGTCGTAAAGAAAAGCCTGTTGACTTTAGTTATCATAAATGGGCCCACCTGGGGGTTCCCATGCTAGTATCAGCAGGTGATGACACGAAGCTTTTTGCTTACTCTGTCAAAGAGTTCACGAAGTTCAGGCCACATGATATTTGCCCTGCACCTCAAAGAGTAGCAATGCAATTGGTTCTTGATACTGATGTCAATAAAATGCCTTTGCTTCTAGTCCAGGCTTCTTATTGGTTAGATATTCTATGTATTCACACAAAAAGTGGTTCTGTTACTGATATGGGGTCTAGCTCTTATGGGGCCCTTGCAACAACAGATCTGCTGGTTCGAGTTAAGAGTAAGGCATCTCGGAAGATCATTTGCAGCACCATTTCTGCTTCAGGGTCGCTTTTTGCATATTCTGACCATGTAAAACCTAGCCTCTTTGAATTGAAAAGTGCTCATGGTAGGAGTGCATGGACTGTTAATAAAAGGCAACTTCCTCAAAAACTCCCATTCGCCCATTCCATGGTTTTTAGTTGTGATTCTTCTCGGTTGATGATAGCAGCTTATGATAGACGGATATATGTTGTGGATGTGGGAAGCTCAGAGCTAGTACATACCTTCACACCCTATAGTGAGGAGCATGATGAGGAATCTCCTCCTGGTGAGCCTCCAATAACAAGAATGTATACAAGCTCTGATGGGCAGTGGTTAGCTGCCATCAACTGCTTTGGGGATGTCTATATATTTAATCTGGAGATACAAAGTTTGTGGCACAGGCAGCATTGGTTCATATCAAGAATGGATGGTGCCTCTGTTACTGCAGGAGGTTTTCCTCCTCAAAACAACAATGTGCTCATAATCACAACGTCTTCAAACCGGGTTTATGCATTTGATGTGGAGGCCAAACAGTTGGGAGAATGGTCAATCCAGCACACATTTGTTCTGCCCAGGAGATACCAGGAGTTTCCTGGGGAAGTTATTGGGCTTTCATTTCCAATATCTTCAAGTTCATCCACAGTTATTGTTTACAGTGCCAGGGCAATGTGCTTGATCGACTTTGGGATGCCAGTGGATCAAGAAGATGAGAGAGATTTGATAAATAGTCAGGATTCAGCTATCATCAAGAAGTTACAAAATTCACCCATTAATGGACGTCTGAAACGTAAGTTGAAAGAAAGTGGTTTAGATACTAAACTCAATGATAGAAAGAATTTTGAATTTTGTGCTTTCAGAGATCCTGTATTATTTGTTGGACACCTTTCAAAAAATTCCCTCTTGATCATAGACAAACCATGGGCGGACGTGGTTAGAACTTTCAGTGCCCCAGTTCACAGACATATTTTCGGGACATAA 2499 0.431 MLEAYRNSSLDWNPSPVVALATSVDDSQVAAAREDGSVEIWLVSPGSVGWHCQLTIHGNPNSRVSSLVWCRSGSKNMPSGRLFSSSIDGSVSEWDLFDLKQKIVLDSIGVSIWQMAAAPYNDACLTQHELQHVGNGYLNDKLNNAEDEDKETSESEDDDSVELHEVSVFENPRVAMGCDDGCVRVYSITISDELTYNKSLPRVSGRILSVTWSPNASMIYSGSSDGFIRCWDAKLAHEIYRITVGLGGLGSGPELCIWSLLALRCGTLVSGDSNGSVQFWDSQHGTLLQAHSLHKGDVNALAAAPSHNRVFSAGSDGQVILYKLSSSDDTSSKGIKKWIYVSYVRAHTHDVRALTVAVPISQEDQLADEKDKRIHCKEKTVDKKDKRIRRKEKPVDFSYHKWAHLGVPMLVSAGDDTKLFAYSVKEFTKFRPHDICPAPQRVAMQLVLDTDVNKMPLLLVQASYWLDILCIHTKSGSVTDMGSSSYGALATTDLLVRVKSKASRKIICSTISASGSLFAYSDHVKPSLFELKSAHGRSAWTVNKRQLPQKLPFAHSMVFSCDSSRLMIAAYDRRIYVVDVGSSELVHTFTPYSEEHDEESPPGEPPITRMYTSSDGQWLAAINCFGDVYIFNLEIQSLWHRQHWFISRMDGASVTAGGFPPQNNNVLIITTSSNRVYAFDVEAKQLGEWSIQHTFVLPRRYQEFPGEVIGLSFPISSSSSTVIVYSARAMCLIDFGMPVDQEDERDLINSQDSAIIKKLQNSPINGRLKRKLKESGLDTKLNDRKNFEFCAFRDPVLFVGHLSKNSLLIIDKPWADVVRTFSAPVHRHIFGT* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0698 832 Gene3D - 249 527 IPR015943 GO:0005515
Vvi18g0698 832 SMART WD40_4 3 42 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 284 323 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 148 187 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 49 95 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 582 632 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 544 579 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 193 232 IPR001680 GO:0005515
Vvi18g0698 832 SMART WD40_4 243 281 IPR001680 GO:0005515
Vvi18g0698 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 332 IPR001680 GO:0005515
Vvi18g0698 832 Gene3D - 553 744 IPR015943 GO:0005515
Vvi18g0698 832 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 15 242 IPR011047 -
Vvi18g0698 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Vvi18g0698 832 Gene3D - 7 141 IPR015943 GO:0005515
Vvi18g0698 832 Pfam WD domain, G-beta repeat 207 232 IPR001680 GO:0005515
Vvi18g0698 832 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 832 IPR044622 GO:0010073|GO:0035266
Vvi18g0698 832 SUPERFAMILY WD40 repeat-like 171 687 IPR036322 GO:0005515
Vvi18g0698 832 Gene3D - 142 248 IPR015943 GO:0005515
Vvi18g0698 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Vvi18g0698 832 MobiDBLite consensus disorder prediction 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0698 Vvi-Chr18 7423595 7432190 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0698 K14548 - vvi:100243694 1620.91