Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0681 | ATGGTGTCATCTGCAAACTATAGTAAAGACACTCTAGTCCTATCCTTTCCCACAATGAAGCACTCAGTTAACCCAACTTCCTCTACTTTGATCATCATCTTGCTTAGAACATCTGCTACTAAGGCGGGAAATGTTCCTAACCCAACTCATCAATCCTCATCTGATTGGCAAGAGCACACATCAGCTGATGGAAGAAGATATTACTACAACAAGAAGACAAGACTTTCTAGTTGGGAAAAGCCTTTGGAATTAATGACTCCAATTGAGAGGGCTGATGCGTCAACTGTTTGGAAGGAATTCACAACTCCAGAAGGAAGGAAATATTATTACAACAAGGTTACAAAGCAATCTAAATGGACAATACCTGAAGAATTGAAGTTGGCTCGAGAACAGGCTGAAAAATCAGTTAGCCAGGAAACTCAATCTGAAATGGGTACAACTTCCAATGAACCTGCTGTTGTTGCTGTCTCCTTGGCCGAAACACCATCTACTGCATCAGTTTCGGTTAGCTCTACCACTTCTTCGACAATATCTGGAATGACTTCAAGCCCAGTTCCAGTTACACCTGTTGTTGCAGTTGTTAACCCTCCTCCTGTGGTGGTTTCTGGAACATCAGCCATTCCAATTGCACAATCTGCTGTAACAACAAGTGCAGTTGGAGTTCAGCCTTCTATGGGAACCCCTTTACCTGCTGCTGTTTCTGGAAGTACTGGGGTTGCTGCTGCTTTCATCAATCCTAACGCCACATCAATGACTAGCTTCGAGAATCTATCAGCTGATGCTACAAATGGAGCTTCAATGCAGGATATAGAGGAGGCAAAAAAAGGAGTGGCAGTTGCAGGAAAAATTAATGTGACTCCGCTAGAGGAGAAAACACTTGACGATGAACCTTTGGTATACTCTACTAAGCTGGAGGCAAAAAATGCATTCAAAGCGCTCTTGGAATCTGCAAATGTTGAGTCTGACTGGACTTGGGATCAGGCAATGAAAGCGATAATTAATGACAAGAGATATGGTGCCCTGAAAACACTTGGTGAGCGGAAGCAAGCATTTAATGAATACTTGGGTCAAAGGAAAAAAATTGAGGCTGAGGAGAGGCGCATGAGGCAGAAAAAAGCCCGGGAAGAGTTTACAACAATGCTGGAAGAGTGCAAGGAACTCACATCATCCATAAAATGGAGCAAAGCTGTAGATATGTTTCAAGATGATGAACGGTTCAAGGCTGTTGAACGGTCTAGGGACCGTGAGGATCTTTTTGAAAACTTCATAATGGAACTTCAGAAAAAGGAAAGGACAAAGGCGCTTGAGGAGCAGAAGCGGAATAGGATGGAGTACAGGCAATTTCTTGAATCTTGTGACTTTATTAAGGTGAACAGCCAGTGGCGGAAAGTTCAAGATCGCCTGGAGGATGATGAAAGATGCTCCCGACTTGAAAAAATTGATCGCTTGGAGATTTTCCAGGAATATATTCGTGACCTAGAGAGAGAAGAAGAGGAACAGAGGAAGATACAGAAGGAACAATTGAGGCGTGCTGAGAGAAAGAACCGAGATGAATTTCGGAAGCTGATGGAAGAGCATGTTGCTGCTGGCACTCTGACAGCCAAAACTCACTGGCGGGATTATTGCATGAAGGTTAAAGATTCGTCACCATATCTGGCTGTTGCATCCAACACCTCTGGTTCAACCCCAAAAGATCTGTTTGAGGATGTTGCTGAAGAATTAGAGAAACAGTATCATGAAGACAAAGCTCGTATAAAGGATGCAATGAAGTTAAGCAAAGTTACGATTGCATCAACATGGACATTTGGAGACTTCAAGGCTGCTATTTTGGATGATGTTGGGTCCCCAAACATTTCAGATGTGAACTTAAAGCTTGTATTTGAGGAGCTACTTGATAGAATAAAGGAGAAGGAAGAGAAAGAAGCTAAAAAACGTCAACGTCTTGCTGATGATTTCAATGATCTGTTGCGCTCCAAAAAGGAGATAACTGCGTCTTCTAATTGGGAAGATTGCAAACCACTTTTTGAAGAAAGCCAAGAATACAGATCAATTGGGGAAGAAAGCTTTGGGAGGGAAATCTTTGAGGAATACATTGCACACTTACAGGAGAAAGCCAAAGAAAAGGAACGCAAGCGAGAGGAGGAAAAGGCCAAAAAAGAGAAAGAGAGAGAGGAGAAAGAGAAAAGGAAGGAGAAAGAAAGGAAAGAGAAAGACAGAGATCGTGAAAGGGAAAAGGGAAAGGAACGATCTAGGAAGGATGAAACAGAGAGTGAAAATGTAGATGTAACTGGCAGTTACGGCTATAAAGAAGATAAAAAAAGGGAAAAGGACAAAGATAGAAAACATCGAAAGCGTCACCAAAGTGCTGTTGATGATGCAAGCTCTGATAAGGAAGAGAAAGAGGAGTCTAAGAAATCTAGAAGACATGGAAGTGATCGAAAAAAATCAAGAAAGCATGCATACACTCCTGAATCAGACACTGAAAGCAGGCATAAAAGACACAAGAGAGAGCACTGGGATGGTTCCCGAAGAAATGGAGGTTATGAAGAACTTGAAGATGGGGAGCTTGGTGAGGATGGGGAAATTCGGTAG | 2592 | 0.424 | MVSSANYSKDTLVLSFPTMKHSVNPTSSTLIIILLRTSATKAGNVPNPTHQSSSDWQEHTSADGRRYYYNKKTRLSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYYNKVTKQSKWTIPEELKLAREQAEKSVSQETQSEMGTTSNEPAVVAVSLAETPSTASVSVSSTTSSTISGMTSSPVPVTPVVAVVNPPPVVVSGTSAIPIAQSAVTTSAVGVQPSMGTPLPAAVSGSTGVAAAFINPNATSMTSFENLSADATNGASMQDIEEAKKGVAVAGKINVTPLEEKTLDDEPLVYSTKLEAKNAFKALLESANVESDWTWDQAMKAIINDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKKAREEFTTMLEECKELTSSIKWSKAVDMFQDDERFKAVERSRDREDLFENFIMELQKKERTKALEEQKRNRMEYRQFLESCDFIKVNSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIRDLEREEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAAGTLTAKTHWRDYCMKVKDSSPYLAVASNTSGSTPKDLFEDVAEELEKQYHEDKARIKDAMKLSKVTIASTWTFGDFKAAILDDVGSPNISDVNLKLVFEELLDRIKEKEEKEAKKRQRLADDFNDLLRSKKEITASSNWEDCKPLFEESQEYRSIGEESFGREIFEEYIAHLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDRDREREKGKERSRKDETESENVDVTGSYGYKEDKKREKDKDRKHRKRHQSAVDDASSDKEEKEESKKSRRHGSDRKKSRKHAYTPESDTESRHKRHKREHWDGSRRNGGYEELEDGELGEDGEIR* | 864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0681 | 863 | FunFam | Pre-mRNA-processing protein 40A | 503 | 584 | - | - | |
| Vvi18g0681 | 863 | FunFam | Pre-mRNA-processing protein 40A | 359 | 432 | - | - | |
| Vvi18g0681 | 863 | Gene3D | - | 92 | 137 | - | - | |
| Vvi18g0681 | 863 | Gene3D | - | 49 | 91 | - | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | FF domain | 505 | 580 | IPR036517 | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | WW domain | 55 | 89 | IPR036020 | GO:0005515 | |
| Vvi18g0681 | 863 | SUPERFAMILY | FF domain | 638 | 707 | IPR036517 | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | FF domain | 295 | 357 | IPR036517 | - | |
| Vvi18g0681 | 863 | Coils | Coil | 426 | 446 | - | - | |
| Vvi18g0681 | 863 | FunFam | Pre-mRNA-processing protein 40A | 433 | 501 | - | - | |
| Vvi18g0681 | 863 | Gene3D | FF domain | 433 | 501 | IPR036517 | - | |
| Vvi18g0681 | 863 | Gene3D | FF domain | 502 | 584 | IPR036517 | - | |
| Vvi18g0681 | 863 | Gene3D | FF domain | 359 | 432 | IPR036517 | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | FF domain profile. | 303 | 357 | IPR002713 | - | |
| Vvi18g0681 | 863 | ProSitePatterns | WW/rsp5/WWP domain signature. | 56 | 81 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | MobiDBLite | consensus disorder prediction | 817 | 851 | - | - | |
| Vvi18g0681 | 863 | Gene3D | FF domain | 639 | 713 | IPR036517 | - | |
| Vvi18g0681 | 863 | MobiDBLite | consensus disorder prediction | 704 | 863 | - | - | |
| Vvi18g0681 | 863 | Pfam | WW domain | 97 | 122 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | Pfam | WW domain | 54 | 81 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | FunFam | Pre-mRNA-processing protein 40A | 639 | 712 | - | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | WW domain | 84 | 125 | IPR036020 | GO:0005515 | |
| Vvi18g0681 | 863 | Coils | Coil | 486 | 525 | - | - | |
| Vvi18g0681 | 863 | CDD | WW | 54 | 83 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | Coils | Coil | 691 | 745 | - | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | FF domain profile. | 438 | 492 | IPR002713 | - | |
| Vvi18g0681 | 863 | FunFam | pre-mRNA-processing protein 40A isoform X1 | 302 | 357 | - | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 50 | 83 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | Coils | Coil | 564 | 591 | - | - | |
| Vvi18g0681 | 863 | Gene3D | FF domain | 303 | 358 | IPR036517 | - | |
| Vvi18g0681 | 863 | Coils | Coil | 627 | 651 | - | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 91 | 124 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | SMART | ww_5 | 51 | 83 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | SMART | ww_5 | 92 | 124 | IPR001202 | GO:0005515 | |
| Vvi18g0681 | 863 | PANTHER | PRE-MRNA-PROCESSING PROTEIN PRP40 | 51 | 617 | IPR039726 | GO:0045292 | |
| Vvi18g0681 | 863 | ProSiteProfiles | FF domain profile. | 370 | 425 | IPR002713 | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | FF domain profile. | 645 | 700 | IPR002713 | - | |
| Vvi18g0681 | 863 | MobiDBLite | consensus disorder prediction | 784 | 808 | - | - | |
| Vvi18g0681 | 863 | FunFam | Pre-mRNA-processing protein 40A | 95 | 123 | - | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | FF domain | 436 | 499 | IPR036517 | - | |
| Vvi18g0681 | 863 | SUPERFAMILY | FF domain | 364 | 431 | IPR036517 | - | |
| Vvi18g0681 | 863 | Coils | Coil | 783 | 803 | - | - | |
| Vvi18g0681 | 863 | MobiDBLite | consensus disorder prediction | 704 | 777 | - | - | |
| Vvi18g0681 | 863 | Pfam | FF domain | 514 | 569 | IPR002713 | - | |
| Vvi18g0681 | 863 | Pfam | FF domain | 372 | 422 | IPR002713 | - | |
| Vvi18g0681 | 863 | Pfam | FF domain | 305 | 354 | IPR002713 | - | |
| Vvi18g0681 | 863 | Pfam | FF domain | 650 | 697 | IPR002713 | - | |
| Vvi18g0681 | 863 | Pfam | FF domain | 441 | 489 | IPR002713 | - | |
| Vvi18g0681 | 863 | SMART | FF_2 | 303 | 357 | IPR002713 | - | |
| Vvi18g0681 | 863 | SMART | FF_2 | 645 | 700 | IPR002713 | - | |
| Vvi18g0681 | 863 | SMART | FF_2 | 512 | 573 | IPR002713 | - | |
| Vvi18g0681 | 863 | SMART | FF_2 | 370 | 425 | IPR002713 | - | |
| Vvi18g0681 | 863 | SMART | FF_2 | 438 | 492 | IPR002713 | - | |
| Vvi18g0681 | 863 | ProSiteProfiles | FF domain profile. | 510 | 573 | IPR002713 | - | |
| Vvi18g0681 | 863 | CDD | WW | 97 | 124 | IPR001202 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0681 | K12821 | - | vvi:100243779 | 1377.07 |