Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0675 ATGAAAGATCTTTTAGAAGCGCATATTCCTCCGGGAGGACGATTGGGGCGTGGACATAAGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATTAGGCCTTGCTCTAGCCTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTATTCTTTACCGGCTTATACGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATCATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTAGAGATTACAATCCGGAGCAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTATTTTTGGGGTTCCATACCTTGGGACTTTATGTTCATAATGATGTCATGCTTGCGTTTGGTACTCCGGAGAAACAAATCTTGATTGAACCGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAACCGGATATGAATAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCATTTTTTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGATACACGTTACACCACGATTTTGAATCAGAACCCCAAACTGTTAAAAAACAAAATTTTTTTACTTTATCTTTCATTGAATCTTTATCAAGGGACCTTAAACAGTTAG 741 0.3792 MKDLLEAHIPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHMYSLPAYTFIAQDFTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQILIEPYLQNTVSIHPISSDPGCDMVPKDEPDMNSSNKISFLNKNPFFDLFHLFHDRNRGDTRYTTILNQNPKLLKNKIFLLYLSLNLYQGTLNS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0675 246 PRINTS Plant photosystem I psaA and psaB protein signature 30 53 IPR001280 GO:0009579|GO:0015979|GO:0016020
Vvi18g0675 246 PRINTS Plant photosystem I psaA and psaB protein signature 69 95 IPR001280 GO:0009579|GO:0015979|GO:0016020
Vvi18g0675 246 PRINTS Plant photosystem I psaA and psaB protein signature 117 139 IPR001280 GO:0009579|GO:0015979|GO:0016020
Vvi18g0675 246 Gene3D Photosystem I PsaA/PsaB 1 196 IPR036408 -
Vvi18g0675 246 SUPERFAMILY Photosystem I subunits PsaA/PsaB 1 165 IPR036408 -
Vvi18g0675 246 Pfam Plant protein of unknown function (DUF825) 156 213 IPR008543 -
Vvi18g0675 246 PANTHER OUTER MEMBRANE PROTEIN, OMPA-RELATED 1 163 - -
Vvi18g0675 246 Pfam Photosystem I psaA/psaB protein 1 163 IPR001280 GO:0009579|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0675 Vvi-Chr18 7060607 7061347 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0675 K02690 - vvi:4025090 320.472