Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0668 ATGGTGGATCAGGGCATCCTGGGATGGATCTTCGCCTCCTTGCTGGGGTTCGTCGTCTTCCGTAGCGTGCTTCTGAAGAACAAGAAGAAGGGCGGTGCTTCTGTGGAGATCAGGGATGAATGCGTGAAAAGCACCGCTAATGGAGAATGCAGATCGAAGACCGCTTGCGAGGAGGCTGACGTCATCATCGTCGGGGCCGGCGTCGCGGGCGCCGCTCTGGCTAATACTCTCGGCAAGGATGGGCGTAGGGTACGCGTGATTGAAAGAGACTTAACTGAGCCTGACCGAATTGTTGGTGAACTGCTACAGCCAGGGGGCTACCTCAAATTGATTGAGTTGGGGCTTCAAGATTGCGTAGAGGAAATTGATGCTCAGCGGGTGTTTGGCTATGCTCTCTTTAAGGATGGAAAGAATACGAAACTCTCTTATCCTCTGGAAAAATTCGATTCAGATGTTGCCGGAAGGAGCTTTCACAACGGCCGCTTCATACAAAGGATGCGAGAGAGAGCTGCAACCCTTCCCAATGTACAGTTGGAGCAAGGAACTGTTACATCTTTACTTGAAGAAAAGGGGACCATTAGAGGGGTAAATTACAAGACTAAAGATGGTGAAACAATGACAGCATATGCTCCTTTAACCATTGTATGTGATGGTTGTTTCTCAAACTTGCGCCGCTCCCTTTGTACCCCTAAGGTAGATGTGCCCTCATGTTTTGTCGGTTTGTTGCTGGAAGACTGTGAGCTCCCATTTGCAAATCATGGGCATGTTGTTTTAGCAGATCCTTCTCCTATCTTGTTTTATCGTATCAGCAGTACAGAGATTCGATGTCTGGTTGATGTACCTGGTCAAAAGGTGCCTTCTATTTCAAATGGTGAAATGGCCAAGTATTTGAAGACTGTGGTGGCTCCCCAAATTCCTCCTGAGCTGTATGATGGGTTTATAGCTGCAATCAATAAAGGAAACATAAGGACGATGCCTAATAGAAGCATGCCAGCTGCTCCACATCCTACTCCTGGGGCCTTGTTGATGGGGGATGCGTTTAATATGCGCCATCCTTTAACTGGTGGAGGAATGACCGTGGCACTATCTGATATTGTTGTGCTCCGAGATCTTCTCAGGCCTCTGCATGATCTGAATGATGCAGCTACACTTTGCAAATATCTCGAGTCCTTTTATACCTTGCGAAAGCCTGTGGCATCCACAATAAATACATTGGCAGGTGCCCTGTATAGGGTGTTTTGTGCTTCACCAGATCAAGCAAGGAAGGAAATGCGTGATGCGTGCTTTGATTATTTAAGCCTTGGAGGTGTGTGTTCATCAGGGCCAGTGTCTCTACTATCAGGGCTAAATCCTCGTCCATTGAGCTTGGTTTGTCACTTCTTTGCGGTGGCAATATTTGGTGTTGGTCGTTTATTGCTGCCATTTCCTTCACCAAAACGTGTATGGATTGGAGCTAGAATAATTTCAGGTGCATCGGGAATCATCTTCCCCATCATAAAGGCAGAGGGAGTTAGACAAATGTTCTTTCCTGCAACAGTTCCAGCATATTACAGAGCTCCTCCTGTTAAGTGA 1572 0.472 MVDQGILGWIFASLLGFVVFRSVLLKNKKKGGASVEIRDECVKSTANGECRSKTACEEADVIIVGAGVAGAALANTLGKDGRRVRVIERDLTEPDRIVGELLQPGGYLKLIELGLQDCVEEIDAQRVFGYALFKDGKNTKLSYPLEKFDSDVAGRSFHNGRFIQRMRERAATLPNVQLEQGTVTSLLEEKGTIRGVNYKTKDGETMTAYAPLTIVCDGCFSNLRRSLCTPKVDVPSCFVGLLLEDCELPFANHGHVVLADPSPILFYRISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQIPPELYDGFIAAINKGNIRTMPNRSMPAAPHPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRDLLRPLHDLNDAATLCKYLESFYTLRKPVASTINTLAGALYRVFCASPDQARKEMRDACFDYLSLGGVCSSGPVSLLSGLNPRPLSLVCHFFAVAIFGVGRLLLPFPSPKRVWIGARIISGASGIIFPIIKAEGVRQMFFPATVPAYYRAPPVK* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0668 523 Pfam Squalene epoxidase 210 482 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vvi18g0668 523 Gene3D - 52 432 IPR036188 -
Vvi18g0668 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 60 82 - -
Vvi18g0668 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 209 224 - -
Vvi18g0668 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 352 - -
Vvi18g0668 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 352 368 - -
Vvi18g0668 523 PANTHER SQUALENE MONOOXYGENASE 8 521 IPR040125 GO:0004506|GO:0016126
Vvi18g0668 523 FunFam Squalene monooxygenase 2 53 433 - -
Vvi18g0668 523 SUPERFAMILY FAD/NAD(P)-binding domain 59 434 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0668 Vvi-Chr18 6994164 6998127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0668 17 522 Miscellaneous Gene Families AT1G58440 77.210 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0668 K00511 - vvi:100254037 1019.99