Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0658 ATGATCAGTAGGAGGGCCTGCTTTCGCAATTTGATCCTATCTCTAAGAACGGGTTCCACTGCATCTAAGCTTAGATCTTCCAATTGCTTTACGTCGAGGACTGCACCTTCCTTGCAGCCACTGGTCGAGCCCTCTCCTTATAGTGATGATGAGTATGCTGATGTGGACTGGGACAATCTGGGATTTGGTCTAATACCCACCGATTACATGTACACAACAAAATGCTCCGAGGGTGGTAATTTTGAAGAAGGCCATCTTAGTCGCTATGGAAATATCGAGTTGAGCCCTTCTGCTGGCGTGTTAAATTATGGACAGGGGCTGTTTGAAGGCACCAAAGCCTATAGGAGAGAAAATGGGCGCCTCTGCCTCTTCCGCCCTGATCAGAATGCCATCCGTATGCAGGTTGGTGCAGAAAGGATGTGCATGCCTTCCCCGTCCATCCATCATTTTGTAGAAGCTGTGAAGCAAACCGCTCTCGCTAACAAGCGCTGGATTCCTCCTCCAGGGAAAGGGTCACTGTATATTAGACCTTTGCTCATGGGAAGTGGACCCGTATTGGGTTTAGGCCCAGCACCTGAATGCACATTCCTCATATATGCTTCCCCTGTTGGCAACTATTTCAAGCAGGTTTCGGCACCATTGAACCTATTTATTGACGATGAGTATCATCGTGCAACTCGTGGAGGGGCTGGAGGGGTAAAAGCCATTACCAACTATTCTCCTGTTTTGAAAGCACAAAGTAGAGCAAAGAGTAGAGGGTTCTCTGATGTGCTATTCCTTGATTCAGTGAATAAGAAAAACATCGAGGAGGTCTCTTCTTGTAACATCTTCATTGTGAAGGATAATGTTATTTCAACTCCAGCTACAGGAGGAACTATTCTTGAAGGAGTGACTCGAAAAAGCATTATTGACATTGCTCTTGATCATGGTTACCAGGTTAAGGAGCGATGTATTCCGGTGGAGGAAGTGATGGAAGCCGATGAAGTTTTCTGCACCGGAACCGCTGTTGGTGTAGCTGCGGTGGGAAGTATTACATATCAAGGCAAAAGGGTGGAATACAAATCGGGTGATCGGTGTGTGAGTCAGGAACTGTTGTCAATGTATACGGGGATTCAAAAAGGTCATATTGAGGACAAGAAGGGCTGGATTCTGGAGATTGACTAA 1164 0.4639 MISRRACFRNLILSLRTGSTASKLRSSNCFTSRTAPSLQPLVEPSPYSDDEYADVDWDNLGFGLIPTDYMYTTKCSEGGNFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENGRLCLFRPDQNAIRMQVGAERMCMPSPSIHHFVEAVKQTALANKRWIPPPGKGSLYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKQVSAPLNLFIDDEYHRATRGGAGGVKAITNYSPVLKAQSRAKSRGFSDVLFLDSVNKKNIEEVSSCNIFIVKDNVISTPATGGTILEGVTRKSIIDIALDHGYQVKERCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEYKSGDRCVSQELLSMYTGIQKGHIEDKKGWILEID* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0658 387 PANTHER AMINO ACID AMINOTRANSFERASE 44 386 IPR005786 GO:0004084|GO:0009081
Vvi18g0658 387 FunFam Branched-chain-amino-acid aminotransferase 215 386 - -
Vvi18g0658 387 FunFam Branched-chain-amino-acid aminotransferase 37 213 - -
Vvi18g0658 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
Vvi18g0658 387 Gene3D - 38 215 IPR043131 -
Vvi18g0658 387 NCBIfam branched-chain-amino-acid transaminase 82 386 IPR005786 GO:0004084|GO:0009081
Vvi18g0658 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Vvi18g0658 387 PIRSF BCAT1 39 387 IPR005786 GO:0004084|GO:0009081
Vvi18g0658 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
Vvi18g0658 387 Gene3D - 216 387 IPR043132 -
Vvi18g0658 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 47 383 IPR036038 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0658 Vvi-Chr18 6907178 6910549 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0658 K00826 - vvi:100266106 780.015