Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0656 ATGATCAGTAGGAGGGCCTGCTTTCGCAATTTGATCCAATCTCTAAGAACGGGTTCCACTGCATCTAAGCTTAGATCTTCCAATTGCTATACGTCAAGGACTGCACCTTCCTTGCAACCAGTGGTCGAGCTCTCTCCTGATAGTGATGATGAGTACGCTGATGTGGACTGGGACAACCTGGGATTTTCTCTAAGACCCACCGATTACATGTACATAACAAAATGCTCCGGGGGTGATAGTTTTGAAGAAGGCCATCTTAGTCGCTATGGAAATATAGAGTTGAGCCCTTCTGCTGGTGTGTTAAATTATGGACAGGGGCTGTTTGAAGGCACCAAAGCATATAGGAGAGAAAATGGGCGCCTCTGCCTCTTCCGCCCTGATCAGAATGCCATCCGTATGCAGGCTGGTGCAGAAAGAATGTGCATGCCTTCCCCATCCATCCATCAATTTGTAGAAGCTGTCAAGCAAACTGCATTCGCTAACAAGCGCTGGATTCCTCCTCCAGGAAAAGGGTCACTGTATATTAGGCCTTTGCTCATGGGGAGTGGACCCGTATTGGGTTTAGGCCCAGCACCTGAATGCACATTCCTCATATATGCTTCCCCTGTTGGCAACTATTTCAAGGAGGGTTTGGCACCCTTAAACCTATTTATTGACGATGAGTATCATCGTGCAACACGTGGAGGGGCTGGAGGGGTGAAAACCATTACCAATTATTCTCCTGTTTTGAAAGCACTAACTAGAGCAAAGAGCAGAGGGTTCTCTGATGTGCTATACCTTGATTCAGTGTATAAGAAAAACATCGAGGAGGTCTCTTCTTGTAACGTCTTCATTGTGAAGGATAATGTTATTTCAACTCCGGCCACAGGAGGAACCATTCTTGAAGGAGTGACTCGAAAAAGCATCGTCGACATTGCACTTGATCACGGTTACCAGGTTAAGGAGCAATGTATTCCAGTGGAGGAAGTGATGGAAGCCGATGAAGTTTTCTGCACCGGAACCGCTGTTGGTGTAGCTGCGGTGGGAAGCATTACATATCAGGGTAAAAGGGTGGAATACAAAATGGGTGATCAGTGTGTGAGTCAGGAACTGTTCTCAACGTATATGGGGATTCAAAAAGGTGATATCGAGGACAAGAAAGGCTGGATTCTGGAGATTGATTAA 1164 0.4631 MISRRACFRNLIQSLRTGSTASKLRSSNCYTSRTAPSLQPVVELSPDSDDEYADVDWDNLGFSLRPTDYMYITKCSGGDSFEEGHLSRYGNIELSPSAGVLNYGQGLFEGTKAYRRENGRLCLFRPDQNAIRMQAGAERMCMPSPSIHQFVEAVKQTAFANKRWIPPPGKGSLYIRPLLMGSGPVLGLGPAPECTFLIYASPVGNYFKEGLAPLNLFIDDEYHRATRGGAGGVKTITNYSPVLKALTRAKSRGFSDVLYLDSVYKKNIEEVSSCNVFIVKDNVISTPATGGTILEGVTRKSIVDIALDHGYQVKEQCIPVEEVMEADEVFCTGTAVGVAAVGSITYQGKRVEYKMGDQCVSQELFSTYMGIQKGDIEDKKGWILEID* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0656 387 NCBIfam branched-chain-amino-acid transaminase 82 386 IPR005786 GO:0004084|GO:0009081
Vvi18g0656 387 Gene3D - 214 386 IPR043132 -
Vvi18g0656 387 Pfam Amino-transferase class IV 106 344 IPR001544 GO:0003824
Vvi18g0656 387 CDD BCAT_beta_family 93 374 IPR033939 GO:0004084|GO:0009081
Vvi18g0656 387 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 48 383 IPR036038 GO:0003824
Vvi18g0656 387 Gene3D - 36 213 IPR043131 -
Vvi18g0656 387 FunFam Branched-chain-amino-acid aminotransferase 215 386 - -
Vvi18g0656 387 ProSitePatterns Aminotransferases class-IV signature. 270 299 IPR018300 GO:0003824
Vvi18g0656 387 PANTHER AMINO ACID AMINOTRANSFERASE 41 386 IPR005786 GO:0004084|GO:0009081
Vvi18g0656 387 FunFam Branched-chain-amino-acid aminotransferase 37 213 - -
Vvi18g0656 387 PIRSF BCAT1 38 387 IPR005786 GO:0004084|GO:0009081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0656 Vvi-Chr18 6893423 6896646 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0656 K00826 - vvi:100260903 786.563