Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0650 ATGAGGAGGATCTGGCCCTGCTGCTTCACAAGACGAGTCTCTAACACCCATCAGAAAGCAGAAGATATTCAGAGGTCCATCGGGACTATGGAGAACCCAAAAGAGGGTAATGCCGACCATGGTGTCTCAGAGAAACAAAATGAAAGCACAATCAAATCAAGGGACAGTTTGTCTTCTAATATCATACTGAACCATGATTTCTCTAGAGGTCTGCATTCATGGAACCTCAATTGCTGCAATGGTTCTGTAGTTTCAGCTGAGTCTGGCTTTTTGGAAGGAATATCAGTAAAATCTGGAGGTAATTATGCTGTAATTACAAATCGCAAGGAATGCTGGCAGGGTTTGGAACAAGATATTACAAGCAGAGTTTCCCTGGGTTCTACTTATTCTGTTTCCGCTTGTGTTGGAGTATCGGGCTCTCTTCAGGGATCTGCCGTAGTCCAGGCCACATTGAAGCTAGAATACCAAGGTTCAGCAACTAGTTATTTATTCATTGGAAGAACCTCTGTATCAAGAGAGCAGTGGAAGAAATTGGAAGGGACATTCTCATTGTCAACTATGCCTGACCGAGTTGTATTTTACTTGGAAGGCCCTTCTCCTGGACTGGACCTTCTCATAGAATCAGTTGTTATCTTCTGTTCTAGCCCCACTGAGGAGGAGAGTTCAAGTACAAGATGTGCTGCAGCAGGAGATGAAAACATCATACTAAACCCCATATTTGAGGATGGTGTTAACAATTGGTCTGGAAGGGGCTGCAAGATTCTATTACATGACTCTATGGGAGGTGGAAAAATTGTTCCACAGTCTGGAAAGTTCTTTGCATCTGCAACTGAACGCACACAGAGCTGGAACGGAATTCAGCAGGAGATCACTGGAAGAGTGCAGAGAAAACTCGCTTACGAGGTTGCTGCTGTGGTTCGGATATTTGGTAACAATGTCACTAGTGCTGATGTACGGGTTACTTTATGGGTCCAAACACCAAATCTCCGTGAACAGTATATAGGTGTTGCCAATTCGCAGGCAACAGACAAGGATTGGATTCAGTTGCAGGGAAAGTTCCTTCTCAATGCCTCCCCATCAAGAGTAGTCATTTATTTGGAAGGTCCACCTCCAGGCACTGACATACTTGTCAATAGCTTAGTAGTAAAACATGCAGAAAAAATCCCTCCTTCACCACCACCAGTTATCGAGGATCCAGCTTTTGGAATTAATACAATCCAGAACAGCAATCTCAATGATGGCTCCAATGGGTGGTTTCCCCTTGGTAGTTGCACTTTAAGTGTTGCAACAGGTTCACCACGTATACTTCCTCCAATGGCAAGAGATTCCCTTGGAGCTCATAATCCTCTAAGTGGTCACTACATCCTTGTAACCAATCGCACACAGACTTGGATGGGTCCTGCTCAGATGATCACTGATAGAGTGAAACTCTATTTGACATACCAAGTGTCTGCTTGGGTTCGAATTGGTCCAGGAGCAACTGCTCCTCAGAATGTGAATGTTGCACTCGGTGTGGATAGTCAGTGGGTAAATGGAGGTCAGGCTAACGTTAGCGATGACAGATGGTATGAAATTGGTGGATCCTTCAGAATTGAGAAGCAACCATTGAAGGTTATGGTTTATGTACAAGGTCCTGCTTCAGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTCCCTGTTGATCGACATGCAAGGTTTAGACATTTAAAGAAGGAGACTGATAAGATACGTAAGCGTGATGTCATCCTAAATTTCTCAGGTTCAGGAACAGGAACTTCTATAGGCACATTTGTTAAAGTCAGACAAACACAGAACAGTTTCGGGTTTGGTTCCTGTGTCAGCCGAACAAACATAGACAATGAAGATTTTGTTGATTTCTTTGTAAAAAATTTCAACTGGGCTGTGTTTGGAAATGAGTTGAAGTGGTATTGGACAGAGTCACAACAAGGAAACTTCAACTACAGAGATGCTGATGAGCTCTTGGACTTGTGCAAGAGCCACAACATGGAAACGCGAGGTCATTGTATCTTCTGGGAAGTGGAGGGCACAGTCCAGCCATGGGTCAAATCACTAAACAAAAATGACTTGATGACGGCTGTTCAGAACCGTCTGACAGGCCTTCTCACCCGCTACAAGGGGAAGTTCAGGCATTATGATGTGAACAACGAGATGCTGCATGGATCATTCTATCAAGATCGATTGGGTAAAGACATTCGAGCAAACATGTTCAAGACTGCAAATCAACTAGATTCATCTGCCGCCCTGTTTGTGAATGATTATCATGTTGAGGATGGATGCGACACCAGATCATCTCCAGAGAAGTACATTGAACAGGTTATTGACCTGCAAAAGCAAGGTGCACCTGTGGGAGGAATTGGAATCCAGGGACATATAGATAGTCCAGTTGGGCCAATTGTTTGTTCTGCCCTAGATAAATTGGGTGTTCTTGGCCTTCCAATCTGGTTCACAGAGCTTGATGTGTCTTCCATTAATGAATGTATCAGAGCAGATGATTTGGAAGTCATGCTTCGGGAAGCTTTTGCCCATCCTGCAGTAGATGGTATTATGCTCTGGGGCTTCTGGGAGTTGTTTATGAGCCGAAACAATGCACATTTAGTGAATGCAGAGGGCGAAATCAATGAAACTGGTTGGAGGTACCTCGCTCTTAGAAAAGAGTGGCTGTCCCATGCTCATGGGCACATCGACGAGCAGGGAGAATTCATGTTTAGGGGCTTCCATGGATCATATGTCGTGGAAATCGGTACTGGCTCAAAGAAAATTTCCAAGACATTTGTCGTTGACAATGGTGAGTCACCTCTGGTGGTTTCCATTGGCTTATAG 2844 0.4416 MRRIWPCCFTRRVSNTHQKAEDIQRSIGTMENPKEGNADHGVSEKQNESTIKSRDSLSSNIILNHDFSRGLHSWNLNCCNGSVVSAESGFLEGISVKSGGNYAVITNRKECWQGLEQDITSRVSLGSTYSVSACVGVSGSLQGSAVVQATLKLEYQGSATSYLFIGRTSVSREQWKKLEGTFSLSTMPDRVVFYLEGPSPGLDLLIESVVIFCSSPTEEESSSTRCAAAGDENIILNPIFEDGVNNWSGRGCKILLHDSMGGGKIVPQSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVAAVVRIFGNNVTSADVRVTLWVQTPNLREQYIGVANSQATDKDWIQLQGKFLLNASPSRVVIYLEGPPPGTDILVNSLVVKHAEKIPPSPPPVIEDPAFGINTIQNSNLNDGSNGWFPLGSCTLSVATGSPRILPPMARDSLGAHNPLSGHYILVTNRTQTWMGPAQMITDRVKLYLTYQVSAWVRIGPGATAPQNVNVALGVDSQWVNGGQANVSDDRWYEIGGSFRIEKQPLKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRHLKKETDKIRKRDVILNFSGSGTGTSIGTFVKVRQTQNSFGFGSCVSRTNIDNEDFVDFFVKNFNWAVFGNELKWYWTESQQGNFNYRDADELLDLCKSHNMETRGHCIFWEVEGTVQPWVKSLNKNDLMTAVQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSSAALFVNDYHVEDGCDTRSSPEKYIEQVIDLQKQGAPVGGIGIQGHIDSPVGPIVCSALDKLGVLGLPIWFTELDVSSINECIRADDLEVMLREAFAHPAVDGIMLWGFWELFMSRNNAHLVNAEGEINETGWRYLALRKEWLSHAHGHIDEQGEFMFRGFHGSYVVEIGTGSKKISKTFVVDNGESPLVVSIGL* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0650 947 SMART glyco_10 641 891 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 SUPERFAMILY Galactose-binding domain-like 58 216 IPR008979 -
Vvi18g0650 947 SUPERFAMILY Galactose-binding domain-like 231 387 IPR008979 -
Vvi18g0650 947 MobiDBLite consensus disorder prediction 26 53 - -
Vvi18g0650 947 PANTHER GLYCOSYL HYDROLASE 390 939 IPR044846 GO:0004553|GO:0005975
Vvi18g0650 947 MobiDBLite consensus disorder prediction 37 51 - -
Vvi18g0650 947 Pfam Carbohydrate binding domain 404 547 IPR003305 GO:0016798
Vvi18g0650 947 Pfam Carbohydrate binding domain 59 199 IPR003305 GO:0016798
Vvi18g0650 947 Pfam Carbohydrate binding domain 233 369 IPR003305 GO:0016798
Vvi18g0650 947 Pfam Glycosyl hydrolase family 10 604 861 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 SUPERFAMILY (Trans)glycosidases 597 897 IPR017853 -
Vvi18g0650 947 FunFam Endo-1,4-beta-xylanase A 596 898 - -
Vvi18g0650 947 Gene3D - 56 212 - -
Vvi18g0650 947 Gene3D - 226 385 - -
Vvi18g0650 947 Gene3D - 401 559 - -
Vvi18g0650 947 SUPERFAMILY Galactose-binding domain-like 402 562 IPR008979 -
Vvi18g0650 947 PRINTS Glycosyl hydrolase family 10 signature 754 765 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 PRINTS Glycosyl hydrolase family 10 signature 786 798 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 PRINTS Glycosyl hydrolase family 10 signature 672 684 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 592 890 IPR001000 GO:0004553|GO:0005975
Vvi18g0650 947 FunFam Glycosyl hydrolase family 10 protein 228 384 - -
Vvi18g0650 947 Gene3D Glycosidases 595 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0650 Vvi-Chr18 6852092 6857567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0650 1 947 Glycoside Hydrolase AT1G58370 67.823 0.0 1334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0650 - - vvi:100253904 1910.96