Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0642 ATGGCTTCGATTTTGCCATCTGAAATCAGTAGACCGAAGATCAATGTTCCCAGAATCGGTGCTGTGGTCCCTCCAAATCCTAGAATCCGATGCAAGGATTATGTTCAGGATTGTTGTTCCTCTCATCTGGAGGTTCAGAACCAGGCCAACTTCGAACGCAGCGGTGTTCCATCAAGATTCATGTTCTATAGAGATGGTTCCTGGGTTGATTTCCCAAGCCAGGTGTTGGAGAATGTGAGACCGGGTTTCTTGGAGCGCAAGACTACGATGGATGTTTCGATCGATGGCTCAGAGTATCGTTTCGATTTTCTGAGAATGTTGCAGATCGATATCTTGACGGGTAAGGGAAGATCGATTGCTTGGATTGATGCGAATGGGAAGTGTTTCTTTCCGAAATTATTCGTTAGCGAAGAGGCTGCCGATGGATCGGAAAATCTGAATACGAAGAGTAAAATAAGATTCGGTGAATACTTTGGAAAGAGGAAGAGGGAGAGATTGGAATCTCAGGAAGAAAGCGAGGGAAATTCGTCAACTAATCGAGAAGCTGTGTCGAGACGGTGGAATTCAAATGATCAAGAAGCTGTATCAAAACGACAGCGTATTCAAACAACATGTGATTCAGAGACATGTAAGTGGCCGAACGTGAAATTGATGAAAAAAGGAGGCAGACCGTATGCAATGGCCGAGAAGTTCTTTTTGTCTCGGTTAAAAGACACTGATCCAGCTGTGAGAGTAACCGCAATTCATCAGTGTACGTGGAAGGGTCCTCTGGAAAAAGCACGGTGGGATGTTTTTCATAAGCAGATGGAGAGGACAAAGGCTGCCCAAGGGATCTGCAATACCACATTTGCTTGGCATGGGACGTCGGCCAAAACCGTAGCCAGCATTTTAACATATGGCTTTGGGGTGCGGAGCCAGATTGATGGATCTGAACCACATGGGTTTGGTATATACCTGTCTTCTGTGCGTTTACCGCATATAAGTGCTATGATGTCCGAGGCAGATGATAATGAAGAAAAGCATGTATTACTGTGCCGAGTAATATTAGGTAATGTTGAAATGGTTGAGGATGGACCGCTTCCTTCTAGTGTGAATTTTGACACTGGTGTGGATAATATTGAGAATCCTACTTGGTATGTGGTAAAGTGGGCCAATATGAACACTCACATTCTTCCCCAGTGTGTTGTGAGCTACAAGTCTTCCCATAATGCATCAGGACAAATGAGACCGTTAGCATTTCTGAAGTGGGTTCCATATTCGTCAAATGCATTTGTTGTGAAATTGTTTTCCAAGTTGGAGATTTTGCTTCCTTCTGAAAAAGTTCAGGAATTGGAGTCTTGGTGCAAAACATACAAGGATGGCAAGCTGCCCAAAGGTGCTTTGGTTGTTCTCTTTGGAGGATCAACTGTTTTGTAG 1416 0.4414 MASILPSEISRPKINVPRIGAVVPPNPRIRCKDYVQDCCSSHLEVQNQANFERSGVPSRFMFYRDGSWVDFPSQVLENVRPGFLERKTTMDVSIDGSEYRFDFLRMLQIDILTGKGRSIAWIDANGKCFFPKLFVSEEAADGSENLNTKSKIRFGEYFGKRKRERLESQEESEGNSSTNREAVSRRWNSNDQEAVSKRQRIQTTCDSETCKWPNVKLMKKGGRPYAMAEKFFLSRLKDTDPAVRVTAIHQCTWKGPLEKARWDVFHKQMERTKAAQGICNTTFAWHGTSAKTVASILTYGFGVRSQIDGSEPHGFGIYLSSVRLPHISAMMSEADDNEEKHVLLCRVILGNVEMVEDGPLPSSVNFDTGVDNIENPTWYVVKWANMNTHILPQCVVSYKSSHNASGQMRPLAFLKWVPYSSNAFVVKLFSKLEILLPSEKVQELESWCKTYKDGKLPKGALVVLFGGSTVL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0642 471 ProSiteProfiles WWE domain profile. 46 121 IPR004170 -
Vvi18g0642 471 ProSiteProfiles PARP catalytic domain profile. 201 417 IPR012317 GO:0003950
Vvi18g0642 471 Pfam Poly(ADP-ribose) polymerase catalytic domain 265 356 IPR012317 GO:0003950
Vvi18g0642 471 SUPERFAMILY ADP-ribosylation 219 406 - -
Vvi18g0642 471 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 33 462 IPR044964 -
Vvi18g0642 471 Gene3D - 214 400 - -
Vvi18g0642 471 MobiDBLite consensus disorder prediction 172 200 - -
Vvi18g0642 471 MobiDBLite consensus disorder prediction 165 200 - -
Vvi18g0642 471 SUPERFAMILY WWE domain 62 119 IPR037197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0642 Vvi-Chr18 6793991 6797088 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0642 - - vvi:100245401 946.036