Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0641 ATGTCGTTTTCATTGACGCCTTCTAAGAGATCATATGAGCGGAGCCTTACTGATTCTAATGGGAAAGGGAAATGGCAAAAGTCAGGAGGTTTTTATTCACAAAATCAATCGTTGAAAATCTCTCCTGGTACTGTTGTTTTTCGTGTACTCTGCCCTGCTTCTAAAACTGGTAGTGTCATTGGGAAGGGTGGCACCATAATTTCACAAATACGTCAAGAAACTGGTGTAAAGGTAAGGGTTGAGGAAACTGTATCCGGATGTGATGAGAGAGTGGTACTTATCACTGGTTCTGATAAAGACACAGAAGCTGACAATGAACAGAGCAAAGAAGATGGTGAGGACACTAAGGCAGCTGAAGAAGTTAGTGATACAAAGGAACCTGGTGAGAATGATGAAGATAAAGAATCCGTTCCTGTGGAAGATTCACAAGTTGAAAAGGGAATTTCATCTGTGCAGAAAGCTCTTTTACTTGTTTTTGAAAGAATGGCAGAAGGAGAATCAGAGACAAATGGAGGGGATGAAGATAGTAATAAGTCTCCTACTTTTGTTGTAAGGTTACTTGTGCTTTCTAGTCAAGTGGGCTGTCTTCTGGGAAAGGGTGGCAGTGTCATCAAGCAAATGTCAGCTGAAAGTGGGGCACAGATTCGCATTCTTCCTAGGGACAAGCTTCCTCTATGTGCATCACCTTCTGATGAACTGGTTCAGATCACCGGGGAATTGGATGCATGTAAACAAGCTCTTCAATCTATTTCTCAACAACTTCTGGAGAATCCACCTCGGGACTATGATATAGTTTCTACCAATCCTACTGGGTCATCATCTCATTTATTTGGTCCTCCTCTTCCTAGGTCTGAAGCACAGCCACCGCCGAACTACTCTTTCCCTGCACAAGGTGCACCTTATGCTGCTGGGGTTCGTGATACCGATTATCACTCAAATACTCCCCAACTTCATAAATTTCATGAAAGTGGCATGCCTGGTTGGATGAAACCTCAGGATATTCTGACCTTCAGGTTATTGTGTCATGATGAGAGGGTGGGAGGTATAATTGGAAAGGGAGGAACCATAATTAAGAACCTTCAGAATGAGACAGGCTGTGAGATCAAAGTTTTGGATGGTGTTCCTGATTCAGAGGACCGGGTCATATTCATTTCTGGTTCAGCGCACCCAGATGATAGGATATCTCCAGCCCAAGATGCAGTTCTCCGTGTGCAGAGCAGGATAGTCAGGGCTATACCTGATAGCAAGGAGAAGACTGTGATAGCAAGGCTACTTGTGTCTTCCACTCAAATTGGTTGCCTCCTAGGGAAGGGTGGTGCCATCATAGCTGAAATGAGGAAATTATCTGGGGCTCATATACGTATATTGGGGAAGGATCAGATTCCAAAGTGTGCTTCAGAAAATGAAGAAGTAGTTCAGATAAATGGAGAATTTGAAGCAGTTCAAGAGGCGCTTTTGCAGATAACCACTAGGTTGCGGCATCATCACTTCCGTGATGCATTTTCTGTCAACCATCCATCTAATCCTGCTTTTACAGATCAAGTACCGCCTTTTCCTCCATATTTGGCAAGGAGGGAATTTTCACCTCCTGGGATGTATTCTAATTTAGGTCCATCCTTTCATAAGTTTGATGCTGTTGGTGTCCTGCATCCACATGGTGGTTTTCATCCCCATGATGATCGAGCTCCATTTATGCACAGCATCCACAGGCTGGGCATCCCCCCTCATATTCCTGAAAGAAAGCCATCTTCTGCACCATGGGGTCACCAGGGCCTGATTGAAGGTGGTGTCCCAATAGGATTGGCAGACTTTGCAGGAGGCCCCCAACGAAGAATACCGGGATTTGGAGGAGGAAACCAACAAGCTATTATCACAAGCACCACTGTTGAAGTTGTTGTTCCTCGTTCTCTTGTTCCTTCAATTTATGGGGAGGATGGTGGATGTTTGAGACAAATCCGGCAGATTTCTGATGCAAAAATTACCATTACTGAGCCTAAACCTGGAGCATCAGAAACTGTGATTATAATATCTGGGACGCCTGAGCAGACCCATGCTGCACAGAGTCTTATTCAAGCATTTGTGTTAAGTGAGACGGAATCGCCTTGA 2106 0.444 MSFSLTPSKRSYERSLTDSNGKGKWQKSGGFYSQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEADNEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSSSHLFGPPLPRSEAQPPPNYSFPAQGAPYAAGVRDTDYHSNTPQLHKFHESGMPGWMKPQDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAHPDDRISPAQDAVLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHFRDAFSVNHPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIGLADFAGGPQRRIPGFGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIIISGTPEQTHAAQSLIQAFVLSETESP* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0641 701 MobiDBLite consensus disorder prediction 258 289 - -
Vvi18g0641 701 Pfam KH domain 47 101 IPR004088 GO:0003723
Vvi18g0641 701 Pfam KH domain 336 388 IPR004088 GO:0003723
Vvi18g0641 701 Pfam KH domain 628 691 IPR004088 GO:0003723
Vvi18g0641 701 Pfam KH domain 184 251 IPR004088 GO:0003723
Vvi18g0641 701 Pfam KH domain 423 488 IPR004088 GO:0003723
Vvi18g0641 701 CDD KH-I_PEPPER_rpt2_like 183 254 - -
Vvi18g0641 701 ProSiteProfiles Type-1 KH domain profile. 626 690 - -
Vvi18g0641 701 ProSiteProfiles Type-1 KH domain profile. 334 401 - -
Vvi18g0641 701 Gene3D K Homology domain, type 1 43 110 IPR036612 GO:0003723
Vvi18g0641 701 Gene3D K Homology domain, type 1 416 496 IPR036612 GO:0003723
Vvi18g0641 701 ProSiteProfiles Type-1 KH domain profile. 181 250 - -
Vvi18g0641 701 SMART kh_6 625 695 IPR004087 GO:0003676
Vvi18g0641 701 SMART kh_6 418 493 IPR004087 GO:0003676
Vvi18g0641 701 SMART kh_6 180 255 IPR004087 GO:0003676
Vvi18g0641 701 SMART kh_6 43 117 IPR004087 GO:0003676
Vvi18g0641 701 SMART kh_6 333 406 IPR004087 GO:0003676
Vvi18g0641 701 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 261 IPR036612 GO:0003723
Vvi18g0641 701 Gene3D - 112 258 - -
Vvi18g0641 701 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0641 701 MobiDBLite consensus disorder prediction 93 141 - -
Vvi18g0641 701 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 332 690 - -
Vvi18g0641 701 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 100 IPR036612 GO:0003723
Vvi18g0641 701 CDD KH-I_PEPPER_rpt2_like 421 493 - -
Vvi18g0641 701 ProSiteProfiles Type-1 KH domain profile. 44 108 - -
Vvi18g0641 701 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 395 IPR036612 GO:0003723
Vvi18g0641 701 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 414 497 IPR036612 GO:0003723
Vvi18g0641 701 ProSiteProfiles Type-1 KH domain profile. 419 488 - -
Vvi18g0641 701 Gene3D K Homology domain, type 1 624 697 IPR036612 GO:0003723
Vvi18g0641 701 CDD KH-I_PEPPER_rpt1_like 44 100 - -
Vvi18g0641 701 MobiDBLite consensus disorder prediction 91 146 - -
Vvi18g0641 701 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 626 696 IPR036612 GO:0003723
Vvi18g0641 701 Gene3D K Homology domain, type 1 334 410 IPR036612 GO:0003723
Vvi18g0641 701 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0641 Vvi-Chr18 6778462 6786424 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0641 K21444 - vvi:100267715 1402.11