Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0634 ATGTGTAACCCCAAGCCCTCTTCTCCATCCTCATTCCTTTCTCCTATGAAAGCCCATTTCATGAGTCTCAACAAAACCATGGATCTTCACACTGATGATGAAGAAGAACAGCAACTCCATAGGTGGCCAACTCCTTCCGAGGCCCTGGAAGAAATCAAAGCCATAGGCAAAATCTCTGGCCCAACTGCTGTCACTGGTCTACTCTTATATTCAAGGGCAATGATCTCCATGCTTTTCCTGGGCTATCTAGGTGAGCTTGAGCTTGCGGGTGGGTCACTCTCCATCGGCTTCGCAAACATCACCGGCTACTCTGTCATCTCTGGGCTGGCCATGGGAATGGAACCCATTTGTGGACAAGCTTATGGCGCAAAGCAATGGAAGCTTCTTGGCTTAACTTTGCAAAGGACAGTGCTTCTCCTCCTCTCCACCTCCATCCCCATCTCCTTCATGTGGCTTAACATGAAGAGAATCCTCTCCTGGTGCGGACAAGATGAAGAAATCTCATCCATGGCTCATACTTTTATTATTTTTTCTATTCCAGATCTCTTCTTCCTTTCAATACTCCACCCGCTTCGGATATATCTCAGGACTCAAAGCATCACATTACCGTTGACTTACTGCTCAGCCATCTCTGTTCTACTCCACGTCCCGCTGAATTTCCTTCTAGTAGTCCACTTTAAGTTGGGTATTGCAGGAGTGGCCATAGCCATGGTATGGACTAACCTCAATCTCTTCCTCTTGCTGATTTCCTTTATATTCTTCTCCGGGGTATACAAGGGCTCATGGGTTGCCCCCAGCATAGACTGCCTCCGCGGGTGGTCGTCTTTACTTGCGCTTGCCGTGCCAACTTGTATCTCAGTTTGCCTCGAGTGGTGGTGGTATGAATTCATGATAATGTTGTGTGGACTTTTAGCCAATCCAAAAGCAACCATTGCTTCAATGGGAATCCTAATCCAAACAACCTCTCTAGTCTATGTCTTCCCATCGGCTCTAAGCCTTGGAGTTTCCACGAGAGTTGGGAACGAGCTGGGTGCCAACCGGCCAGCCAAAGCCCGCATTTGCATGATTGTTTCTCTCTTTTGCGCAGTGGCTTTGGGCCTTGCAGCCATGTTGTTCACGACTTTAATGAGGCACCAATGGGGCCGGTTTTTTACGAACGATGCGGAAGTCCTAGAGCTCACTGCCGTGGCATTACCCATAGCCGGCCTATGTGAGCTGGGGAACTGCCCACAAACTACTGGTTGTGGCGTTTTGAGAGGAAGTGCAAGGCCTACTGAAGGAGCAAATATCAATTTGGGGTCCTTTTACTTGGTGGGCATGCCAGTTGCTATCATCATGGGGTTTGTTGCCAAAATGGGGTTTGCCGGCCTCTGGCTGGGCTTGCTTGCAGCACAGACCTCTTGTGCCTTTCTTATGCTTTACGTGCTCTGTCGAACAGATTGGGTGGTTCAAGTTAAGAGAGCCAGGGACCTTACTCAAACTTCTTCAACTCTTGCTATTCCTTCCTTACCAGTATCATCAGCTTCTGCTTCTGCTTCAGATTCCATCACTAGAGACCCCAAAAGGACTGATCTTGAGGAGGTCTTGTGCATCACTGATGATTTTGTTAAGTCAGCTTCACCTGAAACAGACCCTCTCATACCTCCTCGCATTGTACATTAA 1662 0.4832 MCNPKPSSPSSFLSPMKAHFMSLNKTMDLHTDDEEEQQLHRWPTPSEALEEIKAIGKISGPTAVTGLLLYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKLLGLTLQRTVLLLLSTSIPISFMWLNMKRILSWCGQDEEISSMAHTFIIFSIPDLFFLSILHPLRIYLRTQSITLPLTYCSAISVLLHVPLNFLLVVHFKLGIAGVAIAMVWTNLNLFLLLISFIFFSGVYKGSWVAPSIDCLRGWSSLLALAVPTCISVCLEWWWYEFMIMLCGLLANPKATIASMGILIQTTSLVYVFPSALSLGVSTRVGNELGANRPAKARICMIVSLFCAVALGLAAMLFTTLMRHQWGRFFTNDAEVLELTAVALPIAGLCELGNCPQTTGCGVLRGSARPTEGANINLGSFYLVGMPVAIIMGFVAKMGFAGLWLGLLAAQTSCAFLMLYVLCRTDWVVQVKRARDLTQTSSTLAIPSLPVSSASASASDSITRDPKRTDLEEVLCITDDFVKSASPETDPLIPPRIVH* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0634 553 CDD MATE_eukaryotic 51 487 IPR045069 GO:0042910|GO:1990961
Vvi18g0634 553 NCBIfam MATE family efflux transporter 73 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0634 553 PANTHER MULTIDRUG RESISTANCE PROTEIN 47 481 - -
Vvi18g0634 553 Pfam MatE 61 221 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0634 553 Pfam MatE 282 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0634 Vvi-Chr18 6688711 6690565 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0634 K03327 - vvi:100247181 1019.99