LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0629	ATGGTGAAAGGTCATTCTGCTAGCGTCCAGTATTCCCTGAGGACTGCCTTTTTAGGATTCCTAAGGTGTACTTGTCCAACTATAATGGAGTCAAGAGATAGATTACTTAGAGCACTACGTTCAATGAATGCTGGGGATGCAGCCGATCAAGTTATTCGGCAAGTTGATAAAATGATGAAGAATAATGAGCGTGCTTCACGTGATGCTCGGTTGGGCAGGGATGATCCACCATCAAGTCAGCTGTCTGTTCCTGGAGATCTGTTTAGGAAGAGGTCTATGCATCAGGATAATGAAGAGCCAACTAATGGTCATGGGATGACTTCCAAACGAATTCGTTATGGTCACAACATGCACTCAGCTTCACATGTTCAAATGAGTGATTCTGGGCAGGACTGTGCTTCTGCTAATGGTGTCTCTCCGAAGGTGCCTCTGTTGGATAATGATTTGACTCCTGTTGAACAAATGATTGCCATGATTTGTGCTCTAGTTGCAGAAGGAGAAAGAGGTGCTGAATCACTTGAAATCCTTATATCCCAAATCCACCCTGATCTGTTGGCCGATATTATCGTAACAAATATGAAGCAGTTCTCTAAGGTCCTGTCATCACCTATAGGATTTGGGAACTTGCCAGTGTCTGGACAAACTGGTTCTTCAAGCAGTCCAGCTACTGCTGCTCCAACAATTACAATGCAGTCTTCAGTTCTCCCAGCACAAGTGCCTTTTTCTACAGCAGCTGCAACAAGCATGGCACATTCTGAAATGTCTACTGTCATTAATCTCCCTCCAGATTCTAAGCGCGATCCACGGAGGGATCCTCGTCGGCTGGATCCACGGCGTGTTGGAGTGCCGGTTGGACTACAATCTGTACATATGGTGGAGGATACTGGAGCTATTCAAGCTGAGTTTGATGGTTCTATTTCTTTGAGCAAGCCGCCTTCACTTCCTGTTGTCACAAGTGTAGAAAATACTTCCACATCTTTGGTGTCCAAAACTGAAGGTGATGATAAAATTTTAAAAAATGCATTGATTTCTGAAACTGATCAACCAATTTCCAGAGAGGAGCTTCTGGATGGAGCCAAGGAAGTTGATCATATTCCAGAGATTGGTGCTACTTCAGATGCTGCCCTTTCTCCTGCTCGCACAATTGATGAAGACTCGGCTGCACCAGAGTCATTGGATATTGCAGTGGCAGATGGAGCTGATACATCGCCTTTGATAGAAACTGATCAACATTCTCCAGCACGGTCAAATACTTATGTGTCTGAAGAGACCAGCATTGATTTACCTTTGCCTCCACCATATGTTGAGCTGACTGAAGATCAGAAAATTAGATTGAAAAAGTTGGCACTTGAACGGATTATCGATTCGTACGTGTATTCACGGGAAACAGATTGTAGCCATACACGCATGGCATTACTTGCTCGATTGGTTGCTCAGATTGATGGTGATGAGGATGTGGTTGTGATGCTGCAAAAACATGTTCTTTTGGATTACCAGGGCCAAAAGGGGCATGAACTTGTACTGCACATCCTGTACCACCTGCATGCGCTCATGATCTCAGATTCAGTTGAACACTCTTCATTTGCTGCTGTTGTATATGAAAAATTTCTTCTTGCAGTGGTAAAATCTCTGCTGGAAAAATTACCTGCTTCAGACAAGTCTTTTAGTAAACTGCTCGGTGAAGTTCCTCTTTTGCCCGATTCTGCCTTGAAATTGTTAGATGATCTCTGCTCTTCTGATGTTACTGATCAGCATGGAAAAGTTCTTCGCGACAGGGAGCGTGTCACTCAGGGCCTTGGTGCAGTATGGAGTTTGATTTTGGGCCGCCCACTTAATAGGCAAGCTTGCTTGAATATTGCTTTGAAGTGTGCTGTTCATTCACAAGATGACATTCGAACAAAAGCCATCCGACTGGTGGCAAACAAACTTTATCTTCTTAGCTATATATCAGAAAATATTCAGCAATATGCAACAGATATGTTGTTGTCAGCTGTTAATCAGCATATTTCAGATCCAGAGCTCTCACAATCTGGTTCCAGTGATCAAAGATTAGAAGCGGAGACTGGAAGCCTGGAGACATCAGTTAGTGGTTCTCAAATTTCTGAGCCTGGAACATCTGAAAATGACCCCATGAAGGGTTCACAATCTGTTCAGAACATCTCGACAGTGGAATTTCATCAAGCTCAACGCCTTATTTCTTTGTTTTTTGCTTTATGTACAAAGAAACCTAATCTTCTTCAACTTGTATTCAATATTTATGGGCGTGCTCCTAAGGCTGTTAAGCAGGCAATCCATCGTCATATCCCAATTATTATAGGGGCTCTAGGGCCATTATATCCCGAATTGCTCAGTATAATATCAGATCCACCAGAAGGAAGTGAAAATCTGCTGACACAGGTGCTGAAAATATTAACTGAAGAGAAGACGCCAACCCCACACCTGATTGCAATTGTTAAGCATTTGTATGAAACTAAATTAAAGGACGCCACAATTCTTATCCCAATGCTGTCCTTGCTGTCAAGAAATGAGGTTTTACCTATTTTTCCTCGGCTCATTGACCTTCCATTGGACAAATTTCAGGATGCACTTGCCAATATACTACAGGGTTCAGCTCATACAGGTCCAGCATTGACGCCTGCAGAAGTGTTGGTTGCTATCCATGACATTAGTCCTGAGAAAGATGGCATTGCACTCAAAAAGATAACAGAAGCTTGCTCTGCTTGTTTTGAGCAACGTACGGTTTTCACACCACAGGTTTTGGCAAAGGCCTTGAACCAGATGGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTGGTTGATTTTGTAATGGAGATACTTTCCAAGCTTGTGAGTAAACAGGTGTGGAGAATGCCAAAGTTGTGGGTCGGGTTCTTGAAATGTGTGTCTCAGACACAGCCACATTCTTTCCGTGTACTGTTACAGCTACCAGCTCCACAGCTTGAAAGTGCTCTGAACAAACATGCTAACCTCAGAGGTCCTCTTTCTGCTTATGCTAGCCAACCAAGTATAAAATCATCATTGCCTAGATCAATTCTCATAGTTCTTGGTCTGGTAAATGAACCCCACATGCAGCAATCACACCCTCCATCGTCTCTGCATTCATCAGACACAAGTTCTTCTGTTCATGGAGCAACTCTAACTTGA	3204	0.4316	MVKGHSASVQYSLRTAFLGFLRCTCPTIMESRDRLLRALRSMNAGDAADQVIRQVDKMMKNNERASRDARLGRDDPPSSQLSVPGDLFRKRSMHQDNEEPTNGHGMTSKRIRYGHNMHSASHVQMSDSGQDCASANGVSPKVPLLDNDLTPVEQMIAMICALVAEGERGAESLEILISQIHPDLLADIIVTNMKQFSKVLSSPIGFGNLPVSGQTGSSSSPATAAPTITMQSSVLPAQVPFSTAAATSMAHSEMSTVINLPPDSKRDPRRDPRRLDPRRVGVPVGLQSVHMVEDTGAIQAEFDGSISLSKPPSLPVVTSVENTSTSLVSKTEGDDKILKNALISETDQPISREELLDGAKEVDHIPEIGATSDAALSPARTIDEDSAAPESLDIAVADGADTSPLIETDQHSPARSNTYVSEETSIDLPLPPPYVELTEDQKIRLKKLALERIIDSYVYSRETDCSHTRMALLARLVAQIDGDEDVVVMLQKHVLLDYQGQKGHELVLHILYHLHALMISDSVEHSSFAAVVYEKFLLAVVKSLLEKLPASDKSFSKLLGEVPLLPDSALKLLDDLCSSDVTDQHGKVLRDRERVTQGLGAVWSLILGRPLNRQACLNIALKCAVHSQDDIRTKAIRLVANKLYLLSYISENIQQYATDMLLSAVNQHISDPELSQSGSSDQRLEAETGSLETSVSGSQISEPGTSENDPMKGSQSVQNISTVEFHQAQRLISLFFALCTKKPNLLQLVFNIYGRAPKAVKQAIHRHIPIIIGALGPLYPELLSIISDPPEGSENLLTQVLKILTEEKTPTPHLIAIVKHLYETKLKDATILIPMLSLLSRNEVLPIFPRLIDLPLDKFQDALANILQGSAHTGPALTPAEVLVAIHDISPEKDGIALKKITEACSACFEQRTVFTPQVLAKALNQMVDHTPLPLLFMRTVIQAIDAYPTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTQPHSFRVLLQLPAPQLESALNKHANLRGPLSAYASQPSIKSSLPRSILIVLGLVNEPHMQQSHPPSSLHSSDTSSSVHGATLT*	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0629	1067	PANTHER	PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED	4	1066	-	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	672	716	-	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	405	424	-	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	63	109	-	-
	Vvi18g0629	1067	Gene3D	-	1	72	IPR011989	-
	Vvi18g0629	1067	Pfam	Symplekin tight junction protein C terminal	828	1006	IPR022075	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	404	425	-	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	263	278	-	-
	Vvi18g0629	1067	SUPERFAMILY	ARM repeat	582	965	IPR016024	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	252	279	-	-
	Vvi18g0629	1067	Coils	Coil	48	68	-	-
	Vvi18g0629	1067	MobiDBLite	consensus disorder prediction	1043	1067	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g0629	Vvi-Chr18	6596790	6633867	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0629	K06100		-	qsu:111988265	1346.64