Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0626 ATGCGTGAAAAGCTTGCAATTCCAGAGGCTGAGTGGCCACGAGCCATTGGTGAGCTGTGTAACTTGAATCATATAGAAGAAGCTGCTGTTCTCAGTACCTGCAACAGGATGGAGATATATGTTGTAGCTCTATCCCAGCATCGCGGGGTTAAAGAAGTGACTGAATGGATGTCAAAGACTAGTGGGGTTCCTGTTTCAGAGCTTTGTCATCACCGGTTTTTGCTGTATAACAAGGATGCTACACAGCACCTGTTTGAGGTATCTGCTGGGCTAGACTCTCTTGTCCTAGGAGAAGGTCAAATCCTTGCTCAAGTTAAACAGGTTGTAAAAGTTGGGCAAGGTGTTGTTGGCTTCGGGAGGAACATTAGTGGGCTGTTCAAGCATGCAATCACTGTTGGAAAGCGGGTTAGAACTGAGACAAACATTGCTGCTGGTGCAGTTTCTGTAAGCTCAGCTGCTGTGGAACTGGCCCTCATGAAGCTTCCTGAATCCTCACATGCTACCGCCAGAATGTTGGTGATTGGAGCGGGCAAAATGGGGAAGCTTGTAATCAAACACTTGGTGGCAAAAGGATGCACAAAGATGGTCATTGTGAATCGAGGTGAGGAAAGAGTTGCCGCAATCCGAGAGGAGATGAAGGATGTTGAAATAATCTACAGACCTCTTACAGAAATGCTAGCCTGTGCTGCTGAAGCAGATGTGGTTTTCACTAGCACTGCATCAGAAACCCCTTTGTTTTTGAAAGAGCATGTTAAGGATCTCCCTGCTGTTGGTCAGGATGTTGGGGGTTTGAGGCTGTTTGTTGATATCTCCGTTCCTAGAAATGTCGGTGCATGTGTCTCAGACCTTGAAACTGCACGAGTTTACAATGTTGATGACCTGAAGGAGGTTGTGGCTGCTAATAAAGAGGATCGACTCCGAAAAGCAATGGAAGCTCAGGCAATTATCACAGAGGAATCGAAACAATTTGAAGCTTGGAGAGATTCGCTGGAAACTGTTCCCACTATCAAGAAATTAAGGGCCTATGCTGAAAGAATCAGAGTCGCAGAGCTGGAGAAATGCTTGTCAAAGATGGGTGATGATATCTCAAAGAAAACAAGGAGAGCTGTGGATGATCTTAGCAGAGGTATAGTGAACAAGCTCTTACATGGTCCAATGCAGCACCTGAGATGTGATGGCAGCGACAGCCGGACCCTGAGTGAGACCCTTGAAAATATGCATGCTCTCAATCGAATGTTCAGCCTTGAGACAGAGATATCTTTGTTGGAACAGAAGATTCGAGCCAAGGTGGAACAAACACAGAAGTAA 1308 0.4595 MREKLAIPEAEWPRAIGELCNLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGVPVSELCHHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVVGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHATARMLVIGAGKMGKLVIKHLVAKGCTKMVIVNRGEERVAAIREEMKDVEIIYRPLTEMLACAAEADVVFTSTASETPLFLKEHVKDLPAVGQDVGGLRLFVDISVPRNVGACVSDLETARVYNVDDLKEVVAANKEDRLRKAMEAQAIITEESKQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCLSKMGDDISKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEISLLEQKIRAKVEQTQK* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0626 435 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 309 395 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 145 305 IPR036291 -
Vvi18g0626 435 Hamap Glutamyl-tRNA reductase [hemA]. 1 413 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 CDD NAD_bind_Glutamyl_tRNA_reduct 1 309 - -
Vvi18g0626 435 FunFam Glutamyl-tRNA reductase 145 304 - -
Vvi18g0626 435 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 2 142 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 Gene3D - 1 145 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 Gene3D - 146 298 - -
Vvi18g0626 435 ProSitePatterns Glutamyl-tRNA reductase signature. 83 106 IPR018214 GO:0008883
Vvi18g0626 435 FunFam Glutamyl-tRNA reductase 1 145 - -
Vvi18g0626 435 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 1 140 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 432 - -
Vvi18g0626 435 Pfam Shikimate / quinate 5-dehydrogenase 156 297 IPR006151 -
Vvi18g0626 435 PIRSF GluTR 1 431 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 NCBIfam glutamyl-tRNA reductase 1 395 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vvi18g0626 435 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 311 415 IPR015896 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0626 Vvi-Chr18 6556201 6558026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0626 K02492 - vvi:100259052 822.772