Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0625 ATGGGTACTGGTTGGCGAAGAGCCTTTTGCACTACCATCCATCGAGACTCTCAGGCCACTCATGGGGATAAGCAGCGGCATACCACTCCTAGCCCCAGTCCCAGCCCTAGAAGCGGTACGAAGTTGGGGTTGTTTTCCAGCGGTAGCAACACCTCCACGCCTAGGCTGCAGTCTCAACCTGTTTCCAGTCCCAGCTTGCGCTGCCGAACCACTGTAGCAGCGGCTCAAACACCTTCCATCGACGAGAGTCCCAAACTCCAAGCCAAAACCACTACGCCCACCGGCACCGCCAAAACCCCGAGATCGCTACTGGGCTCGAACCCGTCTTCTCCTAGATCCCCTCTAAAGTTATCCATCTTCAGAAACAGTTTCAAGCTTCGGAATAGCTGTGGAATCTGCTTGCAAAGCGTGAAGACTGGTCAAGGAACGGCCATTTACACAGCAGAGTGCTCGCACGCCTTTCACTTCTCCTGCATAGCAGCTCACGTTAGAAAGCAAGGAAGCCTCGTGTGCCCAGTCTGCAACACCACCTGGAAAGACGAGCCTTTACTCATGATCCATAAGAACCGAAAGCCAGAAGAAGACGAGGTAATCGCGGACAGATATGTCATCAAGTCCCAAAATGAAAACGATAAGAGGAAGAAGGAATCCTTGATCAGGGATGTCAAAACCAAGCTCGAACAACAGCAGCAAATTAAAGCTGCTGATTTTAGGACCTATGACGACGATGAACCTTTGCTGTCTCCTACCTCTGGTGGTCGTTTCATTCCGATACCGGAGGCGGACGAGAATGGGGGAGACGATGAAGAGGAGATCGAGGAGTTTCAGGGATTCTTTGTCAATCCTAATCCTTCATGTTCGGTGAACTCATGCGATGAAACTGTGATAAACAACAGTGGAGATTCGAGGAGGAATGTGGAAGTAAGGATGCTGCAGGAGGCTGCGGTTGTTTCAGTGGGCCGGAGTCACGAGACATACGCCGTGGCTCTTAGGATCAAGGCTCCACCACCACCTCATCACTATGCCAGAACGGCACCGTTTCTAGACCCGGCGCGGCGCGCCCCCATTGATTTAGTCACTGTTCTCGATGTGAGCGCGAGCATGACCGGCTCCAAGCTCCAAATGCTTAAAAGGGCCATGCGCTTGGTTATCTCCTCTCTCGGCCCCTCTGATCGTCTTGCCATTGTTGCCTTCTCAGCTAGTCCTAGGCGATTGTTACCCTTGAGAAGAATGACGGCTCATGGCCAGCGATCAGCTCGCCGCATCATCGATCGGCTTGTATGTAGCCAAGGATCTAGCGTGGGGGAGGCGCTGAGGAAAGCCACTAAAGTGCTCGAGGATAGACGGGAGAGAAACCCCGTTGCCAGCATCATGCTACTATCGGACGGTCAAGACGATCGGGTTCACTCCAAAGCCCCAAATCAACGCCATGTGCCTGCCCACGTCTCCAGCACCCGCTTCTCTCACATAGAGATTCCCGTTCATTCGTTTGGATTCGGGGAAAGCGGCGGCTACAGCCAGGAGCCAGCTGAGGACGCCTTCGCCAAGTGCGTGGGCGGGTTACTGAGCGTGGTGGTTCAAGATCTACGCATTCAGCTGAGCTTCGTTGGCGGCTCTACCCGGGCGGAGATAACGGGTGTTTATCTGTGCAACGGACGGCCTACGGCTTTGAACGCCGGTTCAATTCGACTGGGGGATCTGTACGCGGAGGAGGAGAGGGAATTGCTGGTGGAGCTGAGAGCACCAGCATCGGCGGTGGGTACGCATCACGTGATGTCAGTACGCTGCTGTTACAAAGACTCAGCCACTAAAGAGATGGTGTACGGTAATGAACAGGCACTCCTTGTACCTCAACCCCACACCATCAGATCTGGGCCCAAGATCGAAAGACTAAGAAATCTATTCATCACGACGCGAGCCATAGCTGAGACTAGGAGATTGGTGGAGCATGGTGATATGTCGAGCGGGCATCACTTGCTGTCATCGGCTCGAGCTTTGTTGATGCAGTTCAACTCCATATCAGCCGAAGAGTACATTCGGGGTTTGGAGACGGAGATGGCGGAGCTACATTGGAGGCGACAGCAGCAACTGGACCAACAACACAGGAGAAGAAGCAGCGAGACTAGGGAAGTGACGTTGGTGGATGAGAATGGGGAGCCGCTTACGCCGACATCGGCGTGGAGAGCGGCTGAGAAGCTGGCTAAAGTAGCCATGATGAGGAAGTCGATGAATAAAGTGAGCGACTTGCACGGCTTCGAAAACGCTAGATTCTGA 2274 0.5365 MGTGWRRAFCTTIHRDSQATHGDKQRHTTPSPSPSPRSGTKLGLFSSGSNTSTPRLQSQPVSSPSLRCRTTVAAAQTPSIDESPKLQAKTTTPTGTAKTPRSLLGSNPSSPRSPLKLSIFRNSFKLRNSCGICLQSVKTGQGTAIYTAECSHAFHFSCIAAHVRKQGSLVCPVCNTTWKDEPLLMIHKNRKPEEDEVIADRYVIKSQNENDKRKKESLIRDVKTKLEQQQQIKAADFRTYDDDEPLLSPTSGGRFIPIPEADENGGDDEEEIEEFQGFFVNPNPSCSVNSCDETVINNSGDSRRNVEVRMLQEAAVVSVGRSHETYAVALRIKAPPPPHHYARTAPFLDPARRAPIDLVTVLDVSASMTGSKLQMLKRAMRLVISSLGPSDRLAIVAFSASPRRLLPLRRMTAHGQRSARRIIDRLVCSQGSSVGEALRKATKVLEDRRERNPVASIMLLSDGQDDRVHSKAPNQRHVPAHVSSTRFSHIEIPVHSFGFGESGGYSQEPAEDAFAKCVGGLLSVVVQDLRIQLSFVGGSTRAEITGVYLCNGRPTALNAGSIRLGDLYAEEERELLVELRAPASAVGTHHVMSVRCCYKDSATKEMVYGNEQALLVPQPHTIRSGPKIERLRNLFITTRAIAETRRLVEHGDMSSGHHLLSSARALLMQFNSISAEEYIRGLETEMAELHWRRQQQLDQQHRRRSSETREVTLVDENGEPLTPTSAWRAAEKLAKVAMMRKSMNKVSDLHGFENARF* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0625 757 MobiDBLite consensus disorder prediction 696 714 - -
Vvi18g0625 757 Pfam RING-like zinc finger 130 159 IPR001841 -
Vvi18g0625 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 235 IPR013083 -
Vvi18g0625 757 Gene3D von Willebrand factor, type A domain 357 524 IPR036465 -
Vvi18g0625 757 Pfam von Willebrand factor type A domain 358 464 IPR002035 -
Vvi18g0625 757 SUPERFAMILY RING/U-box 129 179 - -
Vvi18g0625 757 MobiDBLite consensus disorder prediction 1 115 - -
Vvi18g0625 757 FunFam Probable E3 ubiquitin-protein ligase EDA40 357 521 - -
Vvi18g0625 757 MobiDBLite consensus disorder prediction 696 718 - -
Vvi18g0625 757 MobiDBLite consensus disorder prediction 24 115 - -
Vvi18g0625 757 ProSiteProfiles Zinc finger RING-type profile. 130 175 IPR001841 -
Vvi18g0625 757 SUPERFAMILY vWA-like 355 534 IPR036465 -
Vvi18g0625 757 CDD vWA_C3HC4_type 356 526 - -
Vvi18g0625 757 SMART VWA_4 355 534 IPR002035 -
Vvi18g0625 757 ProSiteProfiles VWFA domain profile. 357 501 IPR002035 -
Vvi18g0625 757 SMART ring_2 130 174 IPR001841 -
Vvi18g0625 757 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 128 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0625 Vvi-Chr18 6547188 6549576 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0625 - - vvi:100253915 1453.34