Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0614 ATGGCGTCTCTGCCTTCTGTTGCTGTTACCCGCACTCCCAAGAGCGAATCTGAATTCCGAAAATATTCCGCCAGTTTTCTTCCCAGCGAAAAGAGCCCGAGTGTCTCTTATCAGCGAAGCACCCAATTAGATGGAGTTTCAGAGGCAAGGTGTCTGGACTTCCGAGAAGCGCTCTCTTTTATAAGAGAAGGCACGAAGGTGGAGTCAGCTTTTTACGTACCCATCTTGCAAGAATGCATCGACAAGAAATTGGTTTCAGACGCGCAAAAGATTCATGCCCACATCGTAAAAACCGGAGCCCACAAGGATGCATTTCTGATGACCTTCCTCGTCAATGTTTATGCCAAATGTGGGACAATGGAGACTGCTCGAAAGGTTTTTGACGAATTGCCTCGCAGAAACGTGGTTTCATGGACGACCCTGATGACGGGTTACGTTCACGATTCAAAGCCGGAGTTGGCTGTCCAAGTCTTTCGAGAAATGCTGGAAGCAGGAGCTTATCCCACCAACTACACTTTGGGAACTGCTTTGAGTGCTTCTTCTGATTTGCACTCTAAAGAATTAGGGAAGCAAATCCATGGTTATAGTATTAAATACAGGATTGAATTCGACGCTAGCATTGGCAACTCCCTTTGTAGCTTGTACTCAAAATGCGGCAGCTTGGAATGTGCCGTTAAAGCTTTCAGGAGGATAAGGGATAAGAATGTGATTTCATGGACTACAGTTATATCTGCTTGGGGCGATAATGGTGAAGCTGCAACTGGTCTGCAATTTTTCGTTGAGATGCTTTCCGAGTGTGTTGAGCCCAATGAGTTCACACTGACCAGTGCCTTGAGCTTGTGTTGTGTAATGCAGAGTTTGGACATTGGGACGCAGATCCATTCACTGACCATTAAACTTGGGTTTGAATCAAATCTACCCATAAAGAATTCTATCATGTATTTGTACCTCAAATGTGGGTGGATCCATGAAGCCAAGAAATTGTTTGATGAGATGGAAACTATCAGCTTGGTCACCTGGAATGCGATGATTGCAGGGCATGCCAGGATGATGGATTTTGCAAAGGATGACCTTGCAGCACACCAGTGCGGAACTGAGGCACTTAGCATTTTCCTGAAATTGAATCGGTCTGGTATGAAACCTGATCTGTTCACCTTCTCAAGTGTCTTATCTGTGTGCAGCAGTTTGGTGGCCTTAGAACAAGGAGAACAAGTTCATGCTCAAACCATCAAAACCGGGTTTTTGTCAGATGTGGTTGTGGGAACTGCTCTAGTGAACATGTATAACAAATGCGGAAGCATTGAGAGGGCAAGTAAAGCTTTTGTGGAGATGTCTATCAGGACCTTGATATCATGGACTTCTATGATTACAGGTTATGCCCAGAATGGCCAGCCTCAGCAAGCATTGCTGCTGTTTGAGGATATGAGATTAGCAGGAGTTAGACCAAACAAGATTACCTTTGTAGGTGTTCTTTCAGCTTGTAGTCATGCTGGAATGGTTGATGAAGCATTGGATTACTTTCAGATGATGAAAAATGAGTACAAAATCACTCCTGTGATGGACCATTATGCATGCCTAATCGATATGTTTGTTAGGTTGGGTCGGTTAGACGAAGCTTTTGATTTCATAAAAGAGATGGATTTGGAGCCCAATGAGTTTATATGGTCGATCTTGATTGCAGGCTGTAGAAGTCAAGGGAAATTGGAGTTAGGGTTTTATGCGGCAGAACAGTTACTCAACCTGAAGCCAAAAGATACAGAGACCTACAACCTTTTGTTGAACATGTACCTTTCAGCAGGGAAATGGAAGGAAGTTTCAAGGGTGAGAAAAATGATGAAAGAAGAGAAACTTGGAAGATTAAAGGATTGGAGCTGGATTAGCATCAAGGACAAGATTTATTCATTCAAACGCAATGCCCGGTCACATGCACAGAGTGGGGAGATGTATGAATTGTTGGGGAACTTGCATGAGAAAGCAAAGAGTTTTGGATATGAATGGGAAGAAAGCTTAGAGGTGACCGATGAGGAGGAAGATGCTGATGAGGAGAAGGCATTAACTTCCATTGTTTATCACAGTGAAAAATTGGCTATTGCATTTGGGCTGTTGAACACATCAAATGCTGTACCAATACGGGTTACGAAGAGTATTAGCATGTGCAGGGATTGCCACAATTTTATTAGGATCATCTCGTTGCTGTCTGCTCGGGAAATCATCATTCGGGATAGCAAGCGGCTTCACAAATTCATCAACGGACACTGTTCATGTGGAGATTTTGGAACTCTAATCTGA 2289 0.436 MASLPSVAVTRTPKSESEFRKYSASFLPSEKSPSVSYQRSTQLDGVSEARCLDFREALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGDFGTLI* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0614 762 FunFam Pentatricopeptide repeat-containing protein isoform A 285 401 - -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 237 271 IPR002885 -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 523 546 IPR002885 -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 136 169 IPR002885 -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 450 483 IPR002885 -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 588 616 IPR002885 -
Vvi18g0614 762 NCBIfam pentatricopeptide repeat 485 513 IPR002885 -
Vvi18g0614 762 FunFam Pentatricopeptide repeat-containing protein chloroplastic 55 202 - -
Vvi18g0614 762 Pfam PPR repeat 523 546 IPR002885 -
Vvi18g0614 762 Pfam PPR repeat 237 265 IPR002885 -
Vvi18g0614 762 Pfam PPR repeat 310 333 IPR002885 -
Vvi18g0614 762 Pfam PPR repeat family 133 176 IPR002885 -
Vvi18g0614 762 Pfam PPR repeat family 450 495 IPR002885 -
Vvi18g0614 762 FunFam Pentatricopeptide repeat-containing protein At2g34400 406 657 - -
Vvi18g0614 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Vvi18g0614 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 513 IPR002885 -
Vvi18g0614 762 Pfam E motif 568 626 IPR046848 -
Vvi18g0614 762 Gene3D Tetratricopeptide repeat domain 499 699 IPR011990 GO:0005515
Vvi18g0614 762 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 696 IPR046960 GO:0003723|GO:0009451
Vvi18g0614 762 SUPERFAMILY TPR-like 84 609 IPR011990 GO:0005515
Vvi18g0614 762 Gene3D Tetratricopeptide repeat domain 57 190 IPR011990 GO:0005515
Vvi18g0614 762 Gene3D Tetratricopeptide repeat domain 294 399 IPR011990 GO:0005515
Vvi18g0614 762 Gene3D Tetratricopeptide repeat domain 191 293 IPR011990 GO:0005515
Vvi18g0614 762 Gene3D Tetratricopeptide repeat domain 400 498 IPR011990 GO:0005515
Vvi18g0614 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Vvi18g0614 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Vvi18g0614 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Vvi18g0614 762 Pfam DYW family of nucleic acid deaminases 678 758 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0614 Vvi-Chr18 6439226 6441781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0614 58 758 Glycoside Hydrolase AT3G49170 34.605 1.48e-147 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0614 - - vvi:100252407 1486.47