Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0613 ATGGCAATGGCGCTTCGCGGACTCGCCTCTTCCGTCAAGAAGCCGATTGGGCCTCTTATCAATGGCGGTTCCCTTTACTACATGTCATCTCTCCCGAACGAAGTTGTCTGCGAAAAAGAGAAATCTCGTATTACTTGGACAAAACAATTGAATGCTCCGCTTGAGGTTGTTGATCCGGAAATCGCTGACATCATTGAGCTCGAGAAAGCGAGGCAATGGAAGGGATTGGAACTCATTCCTTCAGAAAATTTCACATCGGTATCTGTAATGCAAGCCGTTGGATCAGTCATGACTAATAAATATAGTGAAGGGTATCCTGGTGCGAGATACTATGGAGGAAATGAGTATATTGACATGGCAGAGTCCTTATGTCAGAAGCGTGCATTAGAAGCTTTCCAGTTGGACCCTGCAAAATGGGGAGTCAATGTGCAGTCATTATCTGGATCCCCTGCCAACTTTCAAGCTTACACGGCATTATTAAAACCTCATGAGAGAATCATGGCACTTGATCTTCCTCATGGTGGGCATCTTTCACATGGTTATCAGACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGTTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGGTGTGTGACAAGCAGAAAGCTGTCATGTTGGCAGACATGGCACATATTAGTGGGTTGGTTGCTGCTGGTGTTATCCAATCTCCTTTTGAATATGCTGATATTGTGACAACCACAACACATAAGTCTCTACGTGGGCCACGTGGAGCAATGATATTCTTCAGGAAGGGGGTTAAAGAGATCAACAAACAAGGGAAAGAAGTGTTGTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGCTCAACATTTGCTCAGAGTCTGTTAGAGAAAGGCTATGAACTTGTATCTGGCGGAACTGATAACCATTTAGTCTTGGTGAATTTGAAAAACAAGGGTATTGATGGTTCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTGGCATTCGAATGGGAACCCCAGCTCTTACATCTAGGGGATTTGTTGAGGAGGATTTTGTGAAAGTAGCCGAGTTATTTGATGCTGCTGTCAAGTTGGCTTTGAAGATCAAAGCTAACAGCAAAGGAACAAAGTTGAAGGACTTTGTGGCAACCATGCAGTCAGATGCCGAAACTCAATCTGAGATTGCGAAGCTCCGCCATGAGGTCGAGGAGTATGCAAAACAATTCCCAACTATTGGTTTTGAGAAAGAAACAATGAAATATAAAGATTGA 1551 0.4326 MAMALRGLASSVKKPIGPLINGGSLYYMSSLPNEVVCEKEKSRITWTKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFQLDPAKWGVNVQSLSGSPANFQAYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDEKTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARIRKVCDKQKAVMLADMAHISGLVAAGVIQSPFEYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTPEYKAYQEQVLTNCSTFAQSLLEKGYELVSGGTDNHLVLVNLKNKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAELFDAAVKLALKIKANSKGTKLKDFVATMQSDAETQSEIAKLRHEVEEYAKQFPTIGFEKETMKYKD* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0613 516 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 39 509 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0613 516 Gene3D - 83 356 IPR015421 GO:0003824
Vvi18g0613 516 FunFam Serine hydroxymethyltransferase 344 504 - -
Vvi18g0613 516 FunFam Serine hydroxymethyltransferase 83 356 - -
Vvi18g0613 516 Hamap Serine hydroxymethyltransferase [glyA]. 53 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0613 516 Gene3D Aspartate Aminotransferase, domain 1 58 503 IPR015422 GO:0003824
Vvi18g0613 516 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 277 293 IPR019798 GO:0030170
Vvi18g0613 516 Coils Coil 481 501 - -
Vvi18g0613 516 PIRSF SHMT 36 511 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0613 516 CDD SHMT 57 478 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0613 516 Pfam Serine hydroxymethyltransferase 54 450 IPR039429 -
Vvi18g0613 516 SUPERFAMILY PLP-dependent transferases 43 507 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0613 Vvi-Chr18 6430726 6437564 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0613 K00600 - vvi:100245411 1021.54