Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0612 ATGGGAAGTGTGGAAATTGAGGCCCCTCGGGTGAATACACTAGAAAATGGAAACATCAACGAAGACGAAGAGTCTCCTATAGAAGAAGTCCGATTAACTGTACCCAACGACGACGACTCTTCTCTTTCTGTATGGACCTTCCGTATGTGGTTCCTGGGCGTGCTCTCCTGTACGCTCCTCTCATTCCTCAACCAGTTCTTCTCCTACCGCAGAGAGCCCTTGGTCATAACCCAAATCACTGTCCAGGTGGCCACTCTCCCAATCGGCCGCTTCATGGCGGCTGTACTCCCAGAGACTAAGTTCCATATTCCAGGCTTCGGGAAAAGGGAGTTCTCTTTCAACCCGGGCCCGTTTAACATGAAGGAGCATGTGTTGATCTCTATATTTGCCAACGCTGGAAGCGCTTTTGGGAATGGATCCGCTTATGCTGTGGGTATTGTTACCATCATCAAGGCCTTTTACAACAGCAGCATTTCCTTCTTGGCTGGATGGCTTCTTATCGTCACTACCCAGGTTCTAGGATACGGTTGGGCCGGGCTCTTAAGGAAGTATGTCGTTGAGCCGGCACATATGTGGTGGCCCGGCACCCTCGTTCAGATCGCCCTCTTCCGGACACTGCATGAAAAAGAAAATGGAGATAATACAGACGGGGACAACAAAAAACGCATGTCAAGATCAAAATTCTTTGTCATTGCAATGACTGGTAGCTTCCTCTGGTACTCGGTCCCCGATTTCTTCTTCCAATCCCTACAAAGTATCTCATGGGTCTGTTGGGCTTTTCCCAAGTCAATCACTGCCCAACAACTCGGTTCTGGTTTTAGTGGACTTGGGTTCGGAGCACTGACCCTGGACTGGTCAGTTGTGGCTTCCTTCTTGTTTAGCCCTCTCATCTGTCCATTCTTCGCCATTGTCAATGTCTTTATAGGCTATGTCTTGATTATCTACATTGTAATGCCCATATCCTACTGGGGCCTCAATGTGTACAACGCCAGAACCTTCCCCATCTTTTCTTCCCACTTGTTCACTGCCCAAGGTCAAAGATACAACACTAGTGCCATTGTTACCAAAAACTTGGAGATTGATTGGGTGCAGTATGAGAAGCAGGGGAGGGTCAATTTGAGTTCATTTTTCGCTATCACATATGGCTTTGGGTTCGCAACTATTGCAGCCACACTCACTCATGTGGCCTTGTTCTATGGAAGGGAAATTTACAATCGATATCGTGCTTCTAAAGAAGGAAAGGAGGATGTTCACACAAGATTAATGAAGAAGTACAAGGACATACCTTCATGGTGGTTTCACTTGCTCCTTGCTCTGACCATCATCATCTCCCTTGCACTCTGCATTTTCCTGAAAGATGAGGTTCAAATGCCATGGTGGGCACTTATATTTGCTGCTGCACTTGCCTTCATATTCACCCTTCCCGTCAGCATCATAACAGCCACTACAAATCAGACGCCAGGGCTGAATATAATCACAGAGTACATAATGGGGATCATATGGCCAGGAAGACCTATAGCTAATGTCTGCTTCAAAACCTATGGCTATATGAGCATGGCTCAGGCGATCTCCTTTCTCAGTGATTTCAAGCTAGGCCATTATATGAAGATCCCTCCAAGATCAATGTTCTTGGTTCAACTCATAGGAACCATCTTAGCTGGAACAGTAAATCTCGGTGTAGCACTGTGGCTTCTAGACTCCATTGACAACATATGCCAAGACAATCTGCTTCCAGCAAACAGTCCTTGGACATGCCCTAGTGACCGTGTCTTCTTCGATGCATCTGTTATATGGGGTTTGGTTGGACCCAAGCGGGTTTTTGGATCTCTTGGAAACTATGGAGCACTCAACTGGTTCTTCCTTGGAGGACTGTTGGGTCCAGTTGCAGTATGGCTCTTGCACAAGAAATTCCCTAAACAATCTTGGATACCCCTTATCAATCTTCCAGTGCTTCTGGGAGCAACTGCTTCTATGCCACCAGCAACACCGGTGAACTATAATGCCTGGATTTTGATTGGAACCATCTTCAACTTTTTTGTGTTCAGGTATAGGAAGAAATGGTGGCAGAGGTATAACTATATCCTTTCCGCAGCTTTGGATGCCGGGGTTGCTTTCATGGCAGTTCTTATATACGTCTCTTTGGGCATTGAGAATAAAAACCTGCACTGGTGGGGTGCTGATCCGGATATTGACCCTGAGCACTGTCCTCTTGCATCTTGCCCCACAGCCAAGGGCGTGATAGTGGATGGCTGCCCTGTCTTTTAA 2265 0.4689 MGSVEIEAPRVNTLENGNINEDEESPIEEVRLTVPNDDDSSLSVWTFRMWFLGVLSCTLLSFLNQFFSYRREPLVITQITVQVATLPIGRFMAAVLPETKFHIPGFGKREFSFNPGPFNMKEHVLISIFANAGSAFGNGSAYAVGIVTIIKAFYNSSISFLAGWLLIVTTQVLGYGWAGLLRKYVVEPAHMWWPGTLVQIALFRTLHEKENGDNTDGDNKKRMSRSKFFVIAMTGSFLWYSVPDFFFQSLQSISWVCWAFPKSITAQQLGSGFSGLGFGALTLDWSVVASFLFSPLICPFFAIVNVFIGYVLIIYIVMPISYWGLNVYNARTFPIFSSHLFTAQGQRYNTSAIVTKNLEIDWVQYEKQGRVNLSSFFAITYGFGFATIAATLTHVALFYGREIYNRYRASKEGKEDVHTRLMKKYKDIPSWWFHLLLALTIIISLALCIFLKDEVQMPWWALIFAAALAFIFTLPVSIITATTNQTPGLNIITEYIMGIIWPGRPIANVCFKTYGYMSMAQAISFLSDFKLGHYMKIPPRSMFLVQLIGTILAGTVNLGVALWLLDSIDNICQDNLLPANSPWTCPSDRVFFDASVIWGLVGPKRVFGSLGNYGALNWFFLGGLLGPVAVWLLHKKFPKQSWIPLINLPVLLGATASMPPATPVNYNAWILIGTIFNFFVFRYRKKWWQRYNYILSAALDAGVAFMAVLIYVSLGIENKNLHWWGADPDIDPEHCPLASCPTAKGVIVDGCPVF* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0612 754 Pfam OPT oligopeptide transporter protein 45 713 IPR004813 GO:0035673
Vvi18g0612 754 NCBIfam OPT family oligopeptide transporter 28 715 IPR004813 GO:0035673
Vvi18g0612 754 NCBIfam small oligopeptide transporter, OPT family 23 719 IPR004648 GO:0055085
Vvi18g0612 754 PANTHER ISP4 LIKE PROTEIN 20 753 IPR004648 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0612 Vvi-Chr18 6411758 6415993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0612 20 753 Organic Solute Cotransporters AT5G64410 75.749 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0612 - - vvi:100247286 1511.89