Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0610 ATGGCCTCTCTAGAAATAGACGGTTCAAGGAGATCAAAATCAGTAGAAGAAATCGACGAGTACGAATTGTCTCCTATCGAGGAGGTTCGATTAACCGTGCCCACCACCGACGATCCCTCGCTGCCCGTATGGACGTTTCGAATGTGGTTTCTGGGTTTGATATCATGTGTGCTTCTGTCCTTCCTCAACACCTTCTTCGGTTACAGGACGGAGCCCCTGGTAATCACCATGATATCTGTGCAGGTCGCCACGCTTCCGGTGGGACGGTTCATGGCGAAGGTGCTGCCTAAGACCAAGTTTCGGGTGCCTGGTTTTGGGTCGAGGGAGTACTCTTTGAACCCGGGGCCCTTCAATGTAAAGGAGCATGTGCTGATATCCATATTCGCAAATGCCGGTGCGGCATTTGGGAGTGGAACGGCTTATGCTATTAGTATTGTGGATATCATTAAGGCTTTCTACCACAGAGAGATCTCTTTCTCGGCTTGTTGGATTCTTGTGATCACAACCCAGGTTCTAGGGTATGGTTGGGCCGGGATTCTGAGGAAGTTCGTAGTTGACCCGGCGGAGATGTGGTGGCCGAGTAGTCTTACTCAAGTCTCTTTATTCAGCGCACTTCACGAGAAAGACAAGAAGCGGATGACAAGAGCGAAATTCTTCTTAATCGCACTCATCTGCAGCTTCTCCTGGTATGTGGTTCCAGGGTACCTCTTCCCTACCTTGGGAACCATCAGTTGGGTGTGCTGGGTATTCCCAAATTCTATCACAGCCCAGCAGATCGGGTCTGGAATGCGTGGCCTAGGCATCGGGGCCTTGACTCTTGACTGGTCAGTCATAGCTTCATTCCTTGGCAGCCCTCTCATCACTCCCTTCTTCGCCATTATTAATGTCCTTGCGGGCTATGTCATTTTCATGTACCTTATCACCCCTGTAGCCTACTGGGGACTTAACGTATACAATGCCAAGAACTTCCCTATCTTCTCCTCCCATTTATTCAATGCCCAGGGACAAAGGTATAATGTTTCTGCAATAGTGAATAATAAGTTCGAGATAGACATGGAAACATATCAGAAGCAAGGACACATACACCTTAGCATTTTCTTTTCTATTTCATACGGCCTTGGGTTTGCTGCTGTTATATCTACTCTCACGCATGTGGCCTTGTTTAATGGAAGGGAAATATATAAACAATTCCGAGCTACATACAAGGGAAAGGAAGACATTCACACAAAACTCATGAAGAATTACAAGGACATACCCAACACGTGGTTTCACCTGATGCTGGGGCTGTCATTGGCTCTGTCTCTGATCCTCTGCATCTTCATGAAAGATGAGATCCAAATGCCATGGTGGGGACTCATCTTTGCAGCATTCCTAGCATTGACATTCACCCTTCCAATCAGCATCATAACTGCTACAACAAATCAGACACCAGGACTGAATATCGTCACAGAATACCTCATGGGAGTCATATTACCAGGACGGCCAATTGCTAATGTCTGCTTCAAAACCTATGGGTATATAAGCATGGCACAAGCAGTCTCCTTTCTCAATGATTTCAAGCTTGGCCATTACATGAAGATTCCTCCCCGATCAATGTTTGTGGTTCAGTTCATTGGCACCATCATAGCTGGAACGGTGAACATTACAGTGGCATGGTGGCTGCTGACAAGCATTGAGAACATTTGCCAGGATCAATTACTTCCTCCTAATAGTCCTTGGACATGCCCAGGTGATCGAGTCTTCTATGATGCATCTGTCATCTGGGGTTTGGTAGGGCCCAGACGAATATTTGGGGATCTGGGAGACTACTCAGCCCTCAACTGGTTCTTTCTCGTTGGCGCACTGGGACCTGTGTTGGTTTGGTTGCTGCATAAAGCATTCCCCACACAGAAATGGATTTCACTCGTTAACCTCCCAGTACTTCTCGGAGCAACGGGTGCAATGCCACCAGCTACAACCCTGAATTTCAACGCATGGATCTTTGTTGGAACAATATTCAATTTCTTCATCTTCAGATACCGAAAGAATTGGTGGCAGAGGTACAATTATGTTCTCTCGGCCGCACTGGACGCTGGGTTGGCTTTCATGGGAGTCCTTTTGTACTTCTCACTGACCATGGCGAACAGAAGTATATCCTGGTGGGGTGCGGAAGGTGAGCACTGTGGGTTGGCCTCATGTCCAACAGCCAAAGGCATCGTGGTAGACGGGTGTCCTGTACATTGA 2223 0.4759 MASLEIDGSRRSKSVEEIDEYELSPIEEVRLTVPTTDDPSLPVWTFRMWFLGLISCVLLSFLNTFFGYRTEPLVITMISVQVATLPVGRFMAKVLPKTKFRVPGFGSREYSLNPGPFNVKEHVLISIFANAGAAFGSGTAYAISIVDIIKAFYHREISFSACWILVITTQVLGYGWAGILRKFVVDPAEMWWPSSLTQVSLFSALHEKDKKRMTRAKFFLIALICSFSWYVVPGYLFPTLGTISWVCWVFPNSITAQQIGSGMRGLGIGALTLDWSVIASFLGSPLITPFFAIINVLAGYVIFMYLITPVAYWGLNVYNAKNFPIFSSHLFNAQGQRYNVSAIVNNKFEIDMETYQKQGHIHLSIFFSISYGLGFAAVISTLTHVALFNGREIYKQFRATYKGKEDIHTKLMKNYKDIPNTWFHLMLGLSLALSLILCIFMKDEIQMPWWGLIFAAFLALTFTLPISIITATTNQTPGLNIVTEYLMGVILPGRPIANVCFKTYGYISMAQAVSFLNDFKLGHYMKIPPRSMFVVQFIGTIIAGTVNITVAWWLLTSIENICQDQLLPPNSPWTCPGDRVFYDASVIWGLVGPRRIFGDLGDYSALNWFFLVGALGPVLVWLLHKAFPTQKWISLVNLPVLLGATGAMPPATTLNFNAWIFVGTIFNFFIFRYRKNWWQRYNYVLSAALDAGLAFMGVLLYFSLTMANRSISWWGAEGEHCGLASCPTAKGIVVDGCPVH* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0610 740 Pfam OPT oligopeptide transporter protein 44 703 IPR004813 GO:0035673
Vvi18g0610 740 PANTHER ISP4 LIKE PROTEIN 16 739 IPR004648 GO:0055085
Vvi18g0610 740 NCBIfam small oligopeptide transporter, OPT family 24 708 IPR004648 GO:0055085
Vvi18g0610 740 NCBIfam OPT family oligopeptide transporter 27 704 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0610 Vvi-Chr18 6398183 6402500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0610 1 739 Organic Solute Cotransporters AT1G09930 75.000 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0610 - - vvi:100259035 1508.81