Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0608 ATGGATTTGATAGTACCCGTGAGCCAAACCCATGAGGGGCTTTACTCATTGCAGCATGTTCATAGGGAGAACACAACAAAAACCTGTTTGGGGACGAGGGCTAGGTTTCGCTCAAACCTTGTTTTAGGGTACAAAGCTCGCTTTCTTGCTTTATCTGATGGTACAAGCAATGAGTGTAAAAAAATCGGGGGGTCTCGAAACCAGAGGCGAAACCAAGTTTTTGCCGCCCTGAGAGCTGATACATTTAGTTCCAATGACAAATTGCCATATGCTGAGAAAAACCAGCACGTTCATTTGAGTGGTGGAAATTACACATCAAATTCCTCAAGCAGTATTGAGGAACATGAGAGTAATAATCATCTTCGTCGATTGGTTAGAAATGGGGAATTGGAGGATGGGTTTAAATTTCTTGAGAGTATGGTTTATCGGGGTGATATTCCTGATATCATACCGTGCACAAGTTTGATTAGAGGGTTTTGTCGTATTGGTAAGACCAAGAAGGCCACTTGGGTTATGGAAATTCTGGAACAGTCAGGGGCGGTTCCTGATGTTATAACTTACAATGTTTTGATTAGTGGGTATTGCAAGTCAGGGGAGATTGATAATGCTCTACAGGTGCTTGACCGAATGAATGTTGCTCCCGATGTTGTTACATATAATACCATTTTGCGTACTTTGTGTGATAGTGGCAAATTAAAGCAAGCAATGGAAGTTCTTGATCGGCAATTGCAAAAAGAGTGTTATCCTGATGTGATAACATACACCATTTTGATTGAAGCAACTTGCAAGGAAAGCGGCGTTGGGCAGGCAATGAAGCTCTTAGATGAGATGAGGAATAAAGGTAGTAAGCCTGATGTTGTCACTTATAATGTTCTTATTAATGGGATTTGCAAGGAAGGGAGGTTGGATGAAGCAATCAAATTCTTGAATAATATGCCATCGTATGGTTGCCAACCTAATGTGATTACCCATAATATCATTTTGCGGAGTATGTGTAGTACGGGAAGGTGGATGGATGCCGAGAAACTCTTATCTGACATGCTTCGAAAAGGATGTTCTCCTAGTGTTGTCACCTTCAATATCTTGATTAACTTCTTGTGTCGGCAGGGACTATTGGGCAGGGCGATTGACATTTTGGAGAAAATGCCTATGCATGGATGCACTCCTAATTCATTGAGCTATAATCCATTGCTTCATGGGTTTTGCAAAGAAAAGAAGATGGATAGAGCAATTGAATATCTGGACATAATGGTGTCTCGGGGGTGTTATCCAGATATTGTGACCTATAATACTTTGCTCACTGCTTTATGCAAAGATGGGAAGGTTGATGTTGCAGTTGAGATTCTTAATCAGTTAAGTAGCAAAGGTTGTTCTCCTGTTTTAATAACTTATAATACAGTTATTGATGGGCTTTCAAAGGTGGGGAAAACGGAACGAGCCATAAAGTTGTTGGATGAGATGCGCAGGAAGGGTCTCAAACCTGATATAATTACCTACTCTTCGCTTGTCTCAGGGCTTAGTAGAGAAGGAAAGGTTGATGAAGCCATTAAGTTTTTTCATGACTTGGAAGGATTAGGTATCAGGCCCAACGCAATCACCTATAATTCTATCATGTTGGGACTGTGCAAGTCTCGGCAAACTGATCGGGCCATTGACTTCTTGGCTTATATGATATCCAAGCGATGTAAACCCACTGAAGCTACATACACCATTCTCATTGAAGGTATTGCATATGAAGGTTTAGCCAAGGAAGCTCTGGACTTGTTGAATGAGCTGTGCTCCAGGGGACTTGTGAAGAAAAGCTCAGCAGAACAGGTGGCAGTCAAAATGTAA 1833 0.4146 MDLIVPVSQTHEGLYSLQHVHRENTTKTCLGTRARFRSNLVLGYKARFLALSDGTSNECKKIGGSRNQRRNQVFAALRADTFSSNDKLPYAEKNQHVHLSGGNYTSNSSSSIEEHESNNHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0608 610 Pfam PPR repeat family 462 507 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat family 284 333 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat family 529 576 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat family 214 263 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat family 389 438 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Vvi18g0608 610 FunFam Pentatricopeptide repeat-containing protein At1g09900 72 240 - -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 287 321 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 427 459 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 462 496 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 532 566 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 185 210 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 252 286 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 357 390 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 497 531 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 217 251 IPR002885 -
Vvi18g0608 610 NCBIfam pentatricopeptide repeat 393 426 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat 179 210 IPR002885 -
Vvi18g0608 610 Pfam PPR repeat 350 382 IPR002885 -
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 384 452 IPR011990 GO:0005515
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 523 594 IPR011990 GO:0005515
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 313 383 IPR011990 GO:0005515
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 244 312 IPR011990 GO:0005515
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 453 522 IPR011990 GO:0005515
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Vvi18g0608 610 FunFam Pentatricopeptide repeat-containing protein At1g09900 385 475 - -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 599 IPR002885 -
Vvi18g0608 610 FunFam Pentatricopeptide repeat-containing protein At1g09900 314 383 - -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Vvi18g0608 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 123 210 - -
Vvi18g0608 610 FunFam Pentatricopeptide repeat-containing protein At1g09900 243 313 - -
Vvi18g0608 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Vvi18g0608 610 Gene3D Tetratricopeptide repeat domain 90 243 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0608 124 609 Glycosyltransferase AT1G05670 31.020 8.58e-76 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0608 - - vvi:100267729 1197.19