Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0603 ATGGCGACTGCATCCAATGAAGCCACGAGCATCTGCAGTCACTGTGACAGATCTATTCCTTCTACAAATATTGATTTGCATTATGTTCATTGCTCCCGAAATCTAGAAAGATGTAAACATTGTGGTGACATGGTTCCCAAAAAACATGCTGAGGAACATTACTTAAATACCCATGCTTCGGTATCCTGTTCACTCTGTAGTGAGACAATGGAACGTGAAATTTTAGCTGTTCATAGGGGTGAAAATTGCCCCCAAAGGATTGTCACATGTGAATTTTGTGAATTTCCTTTGCCTGCAATTGATCTGTCAGAGCATCAGGAAGTATGTGGCAACCGAACAGAATTGTGTCATCTGTGTAGAAGGTACGTTAGACTGCGTGAAAGGAATGACCACGAAGCCAACTGCAATGGTGTCTCATACGATAGTGTTGGTGTACCTGATAATACTGTCAGTCCTTCCAGGGATGCTAGGGCAGCTGAAAGAGAGCAAGGTGGGCGGAGAAGGCCACCACAGGAGTTTTCACAGAGACGTGTTCTATTCACCATTGCAATAACAGGCATTGCTGTTATATTAGGATCACTCTTCTTCCAGAGGAAGACTGAGAACACTGAAATGCATTAG 621 0.4348 MATASNEATSICSHCDRSIPSTNIDLHYVHCSRNLERCKHCGDMVPKKHAEEHYLNTHASVSCSLCSETMEREILAVHRGENCPQRIVTCEFCEFPLPAIDLSEHQEVCGNRTELCHLCRRYVRLRERNDHEANCNGVSYDSVGVPDNTVSPSRDARAAEREQGGRRRPPQEFSQRRVLFTIAITGIAVILGSLFFQRKTENTEMH* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0603 206 MobiDBLite consensus disorder prediction 144 171 - -
Vvi18g0603 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 111 IPR013083 -
Vvi18g0603 206 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 201 - -
Vvi18g0603 206 MobiDBLite consensus disorder prediction 154 171 - -
Vvi18g0603 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 58 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0603 Vvi-Chr18 6313537 6319155 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0603 - - vvi:100252312 413.305