Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0600 ATGGCAACGTTTGAACTTTATCGTAGATCGACGATCGGGATGTGTTTGACGGAAACATTGGACGAGATGGTTCAGAATGGTACTTTGAGTCCAGAGCTCGCCATTCAAGTTCTTGTCCAGTTCGACAAGTCTATGACTGAAGCTCTGGAAAGTCAAGTTAAAAGCAAGGTCACCATTAAGGTATTTCAGTTACTGCCATCTGCCTGTCAAAAAATGAATTCAGCTCCTCAAAATCGATTTTAA 243 0.4156 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKVFQLLPSACQKMNSAPQNRF* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0600 80 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Vvi18g0600 80 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Vvi18g0600 80 FunFam Transcription initiation factor IIA subunit 2 2 54 - -
Vvi18g0600 80 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Vvi18g0600 80 CDD TFIIA_gamma_N 4 49 IPR015872 GO:0005672|GO:0006367
Vvi18g0600 80 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 65 IPR003194 GO:0005672|GO:0006367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0600 K03123 - vvi:100242052 117.087