Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0595 ATGGGGCTGGCTATTTTTTTCACGGTTTTAGCCAAGGTCTTCAATGTTTTTGCCTGGCCTTCATTTGCTCTGATCTACCCCTTATACGCTTCAATTCAGGCTATTGAAAGTGATTCCTACTTCAAGAATGAGCAATGTCTCACTTACTGGATTTTGTTTTCTCTGGCCACAATGTTGGAGTTGGTGTTTGCAAAGCTTCTCCAATGTATTCCATTCTGGCCACATGCAAAAGGAGTGGCTACCTTCCTGTTGGTGATACATTACTTTCAGGGTGCTTCTTATGTCTACCAGCACTTTGTATCGCCATCTATTTCCGGAAACTTACAAATATGTTGCATCTTTTCGATCCTGAGGAAAAAGGATGACATATGGAGTGAGCCTGACAACTTTCTTGATGCAGCAGAAAGATATATTGAAGAGAATGGACCTGAAGAATTGGAGAAACTCCTCATTTGCCAGGAAAATCATGAACCGTATTATCACACTACAGAAAGGAATCTTACCTTGTCAACCAGTCCAATGAAAGCTCAAAGGGAGTGGAGCTGTGCCCTTTGTCTGATAACAACAAGCAGTGAGAAACATTTAAAAAACCACCTCCAGGGGAAGGAGCACAAGGCCAAAGAAGAAGAAGAAGAAAGAGCGAATGAACTGGTGAGAAAGACCAAAGTTAAGTCTTCTTTAACACTGGACAGTAATGATCCGATGGTTTTGCTCGGCAACTTCAATGGCATTGCATTGCTCAACCTTGAAAGATTGCACAACTTTCTAACTCCTGTTGCCAGATCGATTAGATGGTATAGCTGGGAAAAACCCGAGTTTGGATGGACAAAATTAAATACTGATGGATCTATAGATCGAGGAAATGCTGGTTTTGGTGGTTTGTTTCGTGATCACAATGGTGACCCAATCTGTGCTTATGCCTCTAAAGCTCACCAGAATGATATTTTCTTAGTTGAACTATGGGCTATATGGAGAGGCCTTGTTCTTGCCTCTGGTCTGGGGATCAAAGCAATCTGGGTTGAGTCTGATTCAATGAGTGCTGTGAAAACCATCAACAGAAAGCAGCCATATAGCTCAAGAGCTGGTAGCTGTTTGAATCACATCTGGGTACTTCTAGAGAAGTTTGAGAAATACCTAGTTTCACACACATGGCGTGAAACCAACAAAGCAGCTGACTTTCTTTCAAAGATGGATCTTTCTGGAAATGATGTAGTTCTAGGGACAGCTGACTTTCCCAATGGCCTTAACAGTATTATCAAGGATGATGCTGAAGGAAGGATGTATCGAAGAGGGTAA 1296 0.419 MGLAIFFTVLAKVFNVFAWPSFALIYPLYASIQAIESDSYFKNEQCLTYWILFSLATMLELVFAKLLQCIPFWPHAKGVATFLLVIHYFQGASYVYQHFVSPSISGNLQICCIFSILRKKDDIWSEPDNFLDAAERYIEENGPEELEKLLICQENHEPYYHTTERNLTLSTSPMKAQREWSCALCLITTSSEKHLKNHLQGKEHKAKEEEEERANELVRKTKVKSSLTLDSNDPMVLLGNFNGIALLNLERLHNFLTPVARSIRWYSWEKPEFGWTKLNTDGSIDRGNAGFGGLFRDHNGDPICAYASKAHQNDIFLVELWAIWRGLVLASGLGIKAIWVESDSMSAVKTINRKQPYSSRAGSCLNHIWVLLEKFEKYLVSHTWRETNKAADFLSKMDLSGNDVVLGTADFPNGLNSIIKDDAEGRMYRRG* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0595 431 SUPERFAMILY beta-beta-alpha zinc fingers 164 209 IPR036236 -
Vvi18g0595 431 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Vvi18g0595 431 CDD RNase_H_like 278 396 IPR044730 -
Vvi18g0595 431 Gene3D Classic Zinc Finger 163 212 - -
Vvi18g0595 431 Gene3D - 275 399 IPR036397 GO:0003676
Vvi18g0595 431 Coils Coil 192 219 - -
Vvi18g0595 431 Pfam Reverse transcriptase-like 279 397 IPR002156 GO:0003676|GO:0004523
Vvi18g0595 431 PANTHER OS05G0353850 PROTEIN 257 422 - -
Vvi18g0595 431 Pfam Zinc-finger of C2H2 type 180 204 - -
Vvi18g0595 431 SUPERFAMILY Ribonuclease H-like 275 400 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0595 Vvi-Chr18 6214200 6217997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0595 244 399 Glycoside Hydrolase AT2G33160 29.167 1.63e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0595 - - vvi:100264337 869.766