Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0585 ATGCACGGACGACCTCGCAAAGCCCCGAAACCCGAAGACGCAGCAGCTTCAGCGGCCAAAGCTGAAAAGCTACGCGCTCTTCAATCTCAGCTCCTTCACAATCATCACAATCAGATATATACGAAGGAAGCCCTAGAGATCTCCGCCAAGCTACTTGAAGCCAATCCCGAATCATACACAGCTTGGAATTATAGGAAGCTCGCTGTTGAACATAATCTGAGTCACTCCGAGTCTGATCCGGATACAGTCAAATCAATTTTCAGCGAGGAACTTAGAGTCGTAGAGAACTCATTGAAGCAGAATTTTAAGTCTTATGGAGCGTGGCACCATCGTAAATGGGTTCTGAGCAAGGGACATTCATCAGTAGATCATGAATTGCAGCTACTGGATCGGTTTCAGAGGGCTGATTCTCGGAATTTCCATGCCTGGAATTATCGTCGATTTATTGCGGCCTTGAAGGGCATACCTGATGAGGAGGAGTTGAAGTATACAACCAAATTAATAGAGACAAATTTCAGCAATTATTCTGCATGGCACAATCGTAGTGTACTTTTGTCCCATTTGCTGCAAAACAAGGTCAAAGGGTTTTTCCCAAAGGAAAAGGTTTTGGTAGAAGAGTATGAATTTGTACATCAAGCTCTTTTCACTGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTTTGGCTTCTTGATCAAACTGTTAAACCAGAAACTCCTCTGCTGGTTTCTACTTGGCCTGCTCATGGTTCTGATATCATTGTATCAGCAGAAGGCTGCCTGGATGGCCGTGCTTTGTCTCCATTCACAAGTTTCCACTCTGATGCAGGAACATTTCCTCTCATTCTTTACTTCAATGAAGCTGTTGAAGGTGTAAACTCATCTACTGTAACTGTTAAATCAGTGTTTACTGAAAATAAAGATCTTGTTTGGAAACCACTTGCAACAAGTAAGTCCTGTGCTGCCCAAGCATGGGTAACACATCTAAATGTTCCTGATGTAAAGCTCCATCCTTCAACAGCTTATCCCATAGAAGTTAATCTTGGAGACTCTCAGGGAATAATTTCTTTGAGTGGTTCTCACTGTAGCCATCCTTCTCGGTTTGCATTTACAGTGTGTGTACAGCCTCTCAGTTCAAAACATGCTGAAAGGCAGAGTGTAGAGATGATTTTGTGGAGAGATGTAAATTTTCATTTTTATGATGCACATGTCCAAGAATCAAGCCCAATTGCTTATTTTGATCGACTAAGCATTAAAAAGGACCATGAGCCAGCAGCTTCTAAGTGGCATGCAAAGACTCTAGTTAATGAGATAGCCCTTGTTCGGCAACTGTTGTCAGAGATAGACTGTAAAATTGGAAAGCTTACTCTTGCAAGACTGCTGATGGCTCATGATGCAATGGTGTCATACATGGCTCCACATTCTCACAAGAAGGTCCATTCTGAAGAAGTTCTACAACTATATAGTGACCTAATGGAGTTGGACCCAATGCATTCCCAATACTATAAGGAGGCACAAAGCTTAGTCTTATTGCAGCAGGTGACATCCAATAGGGAATCCTTGCTGAAACACTGCTGCCACCATAGGGTCTCGACCTCTTCAAGTGTTGGTAATTCTGTCTGTTTACGACTAAATAATTTGTCTTTATCAAGGATCGGATGTGTTGAGCAATTATTGTGGGTCCAAATGCTTGACCTCAGCCACAATGAACTTCGATCAATTGATGGATTGGAGGCTATGCAGCTTCTCTCTTTCCTGAACCTGAGTCATAATAAGCTTAGCAGTTTTACTGCTTTGGAGCCTTTGAGACTGCTGAAGTTATTAAAGGTGTTGGACATCTCATACAATGAGATAGGTGCCCACCCCGTTGACACAAGAAGGTATTTGTGCTCTTCTCCTTTGTCTCATACGGTAGGAAGTGATTGGAATTTCAATGAATTTGTACCTGACGATGCCAAAGTGACAAACTACTGGGAGGCTTTTGCGATTTTTAGAGGCTTCAATTTGACGCAATTGGATATTGTGGGGAATGCAATCACTGATGAAAAATTCAAGTCATTTCTGATTAAGGTTCTCCCTACACTAAAGTGGGTAGACGGTGAAGAATTGCATTAA 2115 0.4213 MHGRPRKAPKPEDAAASAAKAEKLRALQSQLLHNHHNQIYTKEALEISAKLLEANPESYTAWNYRKLAVEHNLSHSESDPDTVKSIFSEELRVVENSLKQNFKSYGAWHHRKWVLSKGHSSVDHELQLLDRFQRADSRNFHAWNYRRFIAALKGIPDEEELKYTTKLIETNFSNYSAWHNRSVLLSHLLQNKVKGFFPKEKVLVEEYEFVHQALFTDPDDQSGWFYHLWLLDQTVKPETPLLVSTWPAHGSDIIVSAEGCLDGRALSPFTSFHSDAGTFPLILYFNEAVEGVNSSTVTVKSVFTENKDLVWKPLATSKSCAAQAWVTHLNVPDVKLHPSTAYPIEVNLGDSQGIISLSGSHCSHPSRFAFTVCVQPLSSKHAERQSVEMILWRDVNFHFYDAHVQESSPIAYFDRLSIKKDHEPAASKWHAKTLVNEIALVRQLLSEIDCKIGKLTLARLLMAHDAMVSYMAPHSHKKVHSEEVLQLYSDLMELDPMHSQYYKEAQSLVLLQQVTSNRESLLKHCCHHRVSTSSSVGNSVCLRLNNLSLSRIGCVEQLLWVQMLDLSHNELRSIDGLEAMQLLSFLNLSHNKLSSFTALEPLRLLKLLKVLDISYNEIGAHPVDTRRYLCSSPLSHTVGSDWNFNEFVPDDAKVTNYWEAFAIFRGFNLTQLDIVGNAITDEKFKSFLIKVLPTLKWVDGEELH* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0585 704 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g0585 704 SUPERFAMILY L domain-like 511 619 - -
Vvi18g0585 704 Gene3D Protein prenylyltransferase 1 245 - -
Vvi18g0585 704 SUPERFAMILY Protein prenylyltransferase 4 503 - -
Vvi18g0585 704 Gene3D Ribonuclease Inhibitor 511 704 IPR032675 -
Vvi18g0585 704 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 MobiDBLite consensus disorder prediction 1 19 - -
Vvi18g0585 704 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 246 - -
Vvi18g0585 704 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 513 - -
Vvi18g0585 704 FunFam Rab geranylgeranyl transferase like protein 518 704 - -
Vvi18g0585 704 ProSiteProfiles Leucine-rich repeat profile. 582 603 IPR001611 GO:0005515
Vvi18g0585 704 Pfam Leucine Rich repeat 668 682 IPR001611 GO:0005515
Vvi18g0585 704 Pfam Protein prenyltransferase alpha subunit repeat 158 188 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 Pfam Protein prenyltransferase alpha subunit repeat 123 149 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 Pfam Protein prenyltransferase alpha subunit repeat 88 116 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 Pfam Protein prenyltransferase alpha subunit repeat 204 233 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Vvi18g0585 704 ProSiteProfiles Leucine-rich repeat profile. 560 581 IPR001611 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0585 K14050 - vvi:100248920 1394.41