Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0584 ATGTCCAGCAATGATGGTTTCGCAGGTGTTTCAAATTGCTATGTATTCAAAAGCCGATTACAAGAGTATGCACAAAAAGTGGGACTTCCGACGCCTTTATACGATACCATCAAGGAAGGTCCTCCCCATGTGCCTTCCTTTAAGTCCACAGTGATAGTGAATGATGTCAGGTATGATTCTCTACCTGGATTTTCCAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTTGCTCTTGTGGAATTAGCTAAATCTGGGAACATGAAGGAATGCATTTCTCAACCTGTGCATGAAACAGGCTTATGCAAAAACCTGCTCCAAGAATATGCACAGAAGATGAACTATGCAATTCCAATGTATGTATGCCAGAAAGATGAGTCACCGGGTAGAGCAGCCTCTTTTTCTTGTACAGTTGAGATTGGGGGGATTCGTTATATTGGAGCTGCAGCAAGAACAAAGAAAGAAGCAGAGATCAAAGCTGCTAGAACTGCTCTCTTAGCAATCCGGGCAAATACAGATGGAGTTGGTGAGAAATCAATTGGCAACACTCAGTTGACAGTAATACCAGGCAAAAAGAAGGGACCAGAGTCGGGTAATCCTGATGAGCCTGCAAAAGCTCTCAAACCAAAGAAAGCTCGTTTCAAAACCAAGGGGCTTAGGAAGAAATTCCCTGGAAACAAGGTAGGCAATGATCAAGTTGAAGATACAAGGGGTATGGAGGTTGATATAGATAATCAGGTGGGATCAGAACTGCTTCAGACCGATGCATCTATGGTCCAAGTAGCTGAATCTGGACTGTTGTCCATGGAATCAAAGGAGAATTTTGAAGAGGAGAAATCAATTGTAAACCAAAATGGGGGGGACAAAACTGTTGCTGAAGGTGACCCGATTCCTGATATCATTGGTAATTGTCAAAATGGGCAAGCAACAGCTTCAGACATAAAAAAAACCGACCATAAAGCACCTCCTGAGCTGGGAATCTCTTCCATGTCCCCTGCAGAAGTTTTAGTCAGTGTGGCCATGGAGGTGAACAACGTTTCTGAAGCTGGACTGGTGGATTCAGCAATAATGAACAGTTCCAACGAGGATCAGACAGAGGCTGCAAGTGCCGCAAAGGATTTCAAGCAAATGGGTGCAAATGAAGACGATTTCAAGAGCAACGGAGCAAGCGCCCTGGGCATTGTGGCCTCAAATCTAGGGTGA 1203 0.4464 MSSNDGFAGVSNCYVFKSRLQEYAQKVGLPTPLYDTIKEGPPHVPSFKSTVIVNDVRYDSLPGFSNRKAAEQSAAEVALVELAKSGNMKECISQPVHETGLCKNLLQEYAQKMNYAIPMYVCQKDESPGRAASFSCTVEIGGIRYIGAAARTKKEAEIKAARTALLAIRANTDGVGEKSIGNTQLTVIPGKKKGPESGNPDEPAKALKPKKARFKTKGLRKKFPGNKVGNDQVEDTRGMEVDIDNQVGSELLQTDASMVQVAESGLLSMESKENFEEEKSIVNQNGGDKTVAEGDPIPDIIGNCQNGQATASDIKKTDHKAPPELGISSMSPAEVLVSVAMEVNNVSEAGLVDSAIMNSSNEDQTEAASAAKDFKQMGANEDDFKSNGASALGIVASNLG* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0584 400 SUPERFAMILY dsRNA-binding domain-like 103 169 - -
Vvi18g0584 400 FunFam Double-stranded RNA-binding protein 1 95 170 - -
Vvi18g0584 400 SUPERFAMILY dsRNA-binding domain-like 16 84 - -
Vvi18g0584 400 Pfam Double-stranded RNA binding motif 103 166 IPR014720 -
Vvi18g0584 400 Pfam Double-stranded RNA binding motif 17 79 IPR014720 -
Vvi18g0584 400 Gene3D - 98 169 - -
Vvi18g0584 400 SMART DRBM_3 102 169 IPR014720 -
Vvi18g0584 400 SMART DRBM_3 16 83 IPR014720 -
Vvi18g0584 400 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 101 170 IPR014720 -
Vvi18g0584 400 CDD DSRM_AtDRB-like_rpt1 15 83 IPR044450 GO:0003725
Vvi18g0584 400 FunFam double-stranded RNA-binding protein 1 13 89 - -
Vvi18g0584 400 PANTHER RIBONUCLEASE III 13 230 IPR011907 GO:0003723|GO:0004525|GO:0006364
Vvi18g0584 400 MobiDBLite consensus disorder prediction 195 209 - -
Vvi18g0584 400 Gene3D - 16 97 - -
Vvi18g0584 400 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 15 84 IPR014720 -
Vvi18g0584 400 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0584 Vvi-Chr18 5920788 5928672 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0584 - - vvi:100243781 786.949