Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0578 ATGTTGCATAGAGCAGCAACCAATGCATATTCGTGGTGGTGGGCCAGCCACATCAGGACTAAGCAGTCTAAATGGCTTGAACAAAACCTTCATGATGTGGAAGAAAAGGTGCAATTCATGCTGAAAATCATTGATGATGATGGAGACTCATTCGCTCAGAGGGCAGAAATGTACTACAGGAAGAGGCCAGAGCTAATAAACTTGGTGGAAGAATATTTCCGGGCATACAGAGCAATAGCAGAGAGGTATGATCACCTGTCAAGAGAGCTGCAACATGCCAACCGAACTATTGCAACTGTGTACCCTGAAAAGGTTCAGTTTGCCATGGATGATGAAGAAGAAAATGTTCCCAAGGGTAGTGGTGATACCCTCCCTAAAGCTTTGCCTTCTCTTCCAAAATCAACCATCCCTAAAATCCCTAATATTCCAAAGAAAGATTTCCTGGTCCCAACTCCTGCAATCTCAAAAAGAAAACAACTCAAGAAGACTATCAGCTCCATCATAGCTGCAACATGCTCGGGTTTGAGCAAAACTGAGGCACTTGATGAAATCGACAAGATTCAGAAAGAGATTTTGATGCTACAAACAGAAAAAGAGTTTGTCAAGAGCTCATATGAACGTGGGGCTGCCAGGTACTGGGAAATTGAAAGCCAGATCACGGAGATGCAATCCAGAGTTTCTGACTTACAAGATGAGTTCGGTATTGGCACAGTCATTGAAGATGATGAGGCTCGCAGTTTGATGTCTACCACTGCTCTCAAATCATGCCAAGGGACCTTGGCTCAATTGCAAGAGAAACAAGAACGCGTAGCTGAAGAGGCAAGAGTGGAGCGCCAGAAGCTCAAGGAAACCCGGGAGAAGCTGCAGGCTCTCAAACATCAATTTCTTCCCAACCAAACACAACAGCCGCAGCACTCTCAGGACCATGAGACTCTCAGCCATCAATTTCTTCCCAACCAAATGGAAGAGTTGGAGCTCTCTACGGAGCAGGAGTCCCTGACCACAAGCGTGGATATGGATTTGGAATTGTTGCGGGAGAAGATCAAGGAACAACTTGAACTGAATTCTAAGACAACTGTCACGGCACCAGACGTGGCAGAGAGAATTGATGAACTTGTAGAGAAGGTCATCACTTTGGAAGCTGCAGTCTCATCTCAGACTGCTTTGGTAAGGAGATTAAGATTGGAGACAAATGAGCTTCAGACACAGGTTCGGACTCTGGAAGAGAACAAGGAGACCCTGATTGAGGATTCAGACAAAATGAGCACCAAGCTAATAGAGTTAGAGGAGGAGTTAAGCAGAGTTCAAAGTCTCAACCGGAGTGTGGAAGACCAAAACAAGCACCTCCAAACACATTTTACTGAAGCAAGTTATGCTCTGGACCATCTTTCTGAAAAATTGCAAGGTGTGAAGCTAGATATGGAGGCCAAGGATATGACTTGGTTTCAAGAAGAGCGAGCTGTTTTGGATGTCTTAACAGAAAAAGAGTTCGAAGAACATGAAGATTTGCTTCCCCAGGGTAATGGTTCAGCTCTCTCAGAAGATATGGAGACCCATGAGGAGGGGAAGAAAGATGAGAATCCAGATTACAGTAGTTCTGTCAAAGCTGAAGAAGAAAATTTCACTCAGTACAACCCTGGTAACGTTTTAGTGACTTCAGAAAACATGAAAACAGGAAATCAAGAGGAGAAAGGGCATGTTCCAGATCTCAGTCATTCTGCTAAAGCTCCTGATACTCCTGAAAAAGGTCAGGAACTAAAGGAGCAGAAGGAAGATGAGAAGCAAGAATTGGGCCACCCAGTAGACAGCAATCCAGACATTGAGGACCAGGATTTGGGGATGGAGGAAGGAGATCAACCAAATTGGAGGCAGCTGTTCATAAATGGTTTAGAGCACAGAGAAAAGGCACTACTGGATGAGTACACCTCAATTCTTCGAAGCTACAAGGAAGTGAAGAAGAAGCTCACTGAGGCAGAGAAGAAAAACCGGGATAGCTTCTTTGAATCAGCACTGCAGATAAGGGAACTGAAGAATGCTAATGCCTTGAAAGACAAAGAGATTCGATCACTACGTCAAAACATCTCCCCACAAACAAATCCAGGTGAAAATTGGGACACCAGTTTGACCGAAGATAAACCCTCACAGCAGGGAGAGGCCCATGCTAGCATAAGCAGAGAAGCCAGCTCCAAGTTTTCTAAAATTCCTTCTCTAAATCCAGAACAGCAGTCAGTTACTGGGTCATTAGACAATCAATCCATACAAGGAAAGGAAGAATCAACGGCATCAGAGAGCATGAAGAAGTCGCCTACAAAAAGTGAACAGGGTGAAATCAAGGAAATTCCTGTTGACGAGTCTCTCGCTGTTGAGACCACTGAAGAAAAAATCCGTGCAGACATTGATGATATTCTGGAAGAAAACCTGGAGTTTTGGCTGAGGTTTAGCACCTCGTATCATCAGATACAAAAATTCCAGACTTCAATCCAGGATCTACAAGCAGAGTTGTTGAAACTGAAGGAAGATAAGAAGAATGAAGGAGGTACAAAGCAGCAGTCTACAAAATCAGATGCCCGCCCAATATACACACACATGAGAGAGATACAAACGGAATTAACATTGTGGTTGGAACACAACGCCTTACTGAAAGAAGAACTGCAGGGTAGATTCTCATCTTTGTGCAACCTTCAAGAAGAGATATCAAGAATCTTGGATGCAGATTCTAATGCACAAGAAGCTGAGCTCAGCTACTATCAGGCTGCAAAGTTTCAAGGTGAGCTTCTGAACATGAAACAGGAGAACAAGAAGGTTAAAGAAGAGTTGCAAAAGGGTCTTGATCGTGTAAGAGCACTCCAACTTGAAGTCGAAAGGACACTGTCACAACTGGATGAGGATTTTGAGATATCAAAATCAAAAAGTCATCCTTCCAACTGGAAGAACTCGGTAAATCGGACTCGAATACCATTGCGTTCTTTCCTATTTGGGGTTAAGTTAAAGAAGCAGAAACCATCATTCTTTGCATGCATGAGTCCAACACTGCAGAAACAATACAGTGATCTAACAGCTGGACTCCCACCGTAG 3075 0.438 MLHRAATNAYSWWWASHIRTKQSKWLEQNLHDVEEKVQFMLKIIDDDGDSFAQRAEMYYRKRPELINLVEEYFRAYRAIAERYDHLSRELQHANRTIATVYPEKVQFAMDDEEENVPKGSGDTLPKALPSLPKSTIPKIPNIPKKDFLVPTPAISKRKQLKKTISSIIAATCSGLSKTEALDEIDKIQKEILMLQTEKEFVKSSYERGAARYWEIESQITEMQSRVSDLQDEFGIGTVIEDDEARSLMSTTALKSCQGTLAQLQEKQERVAEEARVERQKLKETREKLQALKHQFLPNQTQQPQHSQDHETLSHQFLPNQMEELELSTEQESLTTSVDMDLELLREKIKEQLELNSKTTVTAPDVAERIDELVEKVITLEAAVSSQTALVRRLRLETNELQTQVRTLEENKETLIEDSDKMSTKLIELEEELSRVQSLNRSVEDQNKHLQTHFTEASYALDHLSEKLQGVKLDMEAKDMTWFQEERAVLDVLTEKEFEEHEDLLPQGNGSALSEDMETHEEGKKDENPDYSSSVKAEEENFTQYNPGNVLVTSENMKTGNQEEKGHVPDLSHSAKAPDTPEKGQELKEQKEDEKQELGHPVDSNPDIEDQDLGMEEGDQPNWRQLFINGLEHREKALLDEYTSILRSYKEVKKKLTEAEKKNRDSFFESALQIRELKNANALKDKEIRSLRQNISPQTNPGENWDTSLTEDKPSQQGEAHASISREASSKFSKIPSLNPEQQSVTGSLDNQSIQGKEESTASESMKKSPTKSEQGEIKEIPVDESLAVETTEEKIRADIDDILEENLEFWLRFSTSYHQIQKFQTSIQDLQAELLKLKEDKKNEGGTKQQSTKSDARPIYTHMREIQTELTLWLEHNALLKEELQGRFSSLCNLQEEISRILDADSNAQEAELSYYQAAKFQGELLNMKQENKKVKEELQKGLDRVRALQLEVERTLSQLDEDFEISKSKSHPSNWKNSVNRTRIPLRSFLFGVKLKKQKPSFFACMSPTLQKQYSDLTAGLPP* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0578 1024 Coils Coil 820 847 - -
Vvi18g0578 1024 Coils Coil 76 96 - -
Vvi18g0578 1024 Coils Coil 638 661 - -
Vvi18g0578 1024 Coils Coil 673 693 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 760 785 - -
Vvi18g0578 1024 Coils Coil 253 294 - -
Vvi18g0578 1024 Coils Coil 918 952 - -
Vvi18g0578 1024 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 678 785 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 514 533 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 691 759 - -
Vvi18g0578 1024 PANTHER PROTEIN NETWORKED 2D 1 1021 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 498 620 - -
Vvi18g0578 1024 Coils Coil 212 232 - -
Vvi18g0578 1024 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Vvi18g0578 1024 Coils Coil 390 448 - -
Vvi18g0578 1024 Coils Coil 177 197 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 534 558 - -
Vvi18g0578 1024 MobiDBLite consensus disorder prediction 559 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0578 Vvi-Chr18 5851680 5855061 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0578 - - vvi:100267818 1957.96