Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0567 ATGAAGAGTTCTTCTTGTAGAAGCTTCGAAGTTTATGATTTCAACGAAGAAGATGATAGTGCTGAAGTGGCTGCCGCACGATACTTGGGAAATTACAAAACCCCTGAAAACCCTAATTCCGAGACTCCCGCCATCATGAAGTACGAGCTCCTTAGTTGCGCTGCACGGGGCGACGTTGTAAAGGCAAAGGAAATTGACAATGTACAGTGGGTCGATGTTGATGCGATCGACAATGATGATAGTGGCAAATGCGATATTTCCTTAACTCCTAGCGTAGAAGGAGAGGAGTCCGCTGGGAAACAAGGAACTGCGCAGTCCGATTGTAATAGCGATGAAGGAAATGCCCCTTCTAAAGCAGACACTCACCGAAGTTTTTTTTCCGTTCTTCAAACGGATGATTCGAATGATGCAGCTGCTTCGCCGGGTGACTGTAGATTGAATTCTGACCTTCCAGAGTCTCCTCCCAGTGATGAGCAACTTGATGTTACTTCGGAAGCTGATGAAAGCATGAAAGAGAACACTCTCTCTAGTCCTGCTTCTGATACTGCAGAACATGGCGCTTCTTTAGATGGACAAGTTTCCGATGATGGCTTTGGCAACTGGGACATGCAGGATGACATAAATATGGAGGTAGTTGTTTATCCTGATTATTTTGTATATCGAGATGAATATTGTACGGAAGCTGTGGTTGCTTTTTCCAGCAGTTGCATCAAAATCAAGGGTTCAACTGGATATGAAAAGAAAGGATCCTTTAACTTTCAATGGGGACTTGATGATATCATTGATATTAAATCTCAGTGGTGTGGAAGGGTTGGAGTGGCCATGATTCAGCTACGTGTAATATCAAAGGATGCTGTACAAGTTGGTTCTCCATGTGGCACATCAAGGATTGAGGAGTTGAAGTTTGCTGTTGTTGACTCCAACTGGTCGGTCAGGCAAGAAAAGATCACATCTTTGCATGGGAAATACAAATCTGTATGGAATGTTATGCTTGACACGGATATGGATGGAGATGCTTTAGGAGAGGACAACTTTATCATCCCAAATAGCTATTTCCCAAAATTTGATGACCAATTTGAAGAGGTTATCTATCCAAAAGGAGATTCTGATGCTGTTTCTATCAGTAAGAGAGATATTGATCTATTGCAGCCAGAGACATTCATCAATGATACAATTATTGACTTCTACATCAAATATTTGAAGAATAAAATCCAACCTGAAGAAAGGCATAGGTTCCATTTTTTTAATAGTTTTTTCTTCCGAAAGTTGGCTGATCTAGACAAAGATCCATCTAGTGCTTCTGAAGGCAGGGCTGCTTTTCAGCGTGTCCGTAAATGGACAAGGAAAGTGGATTTATTTGAAAAGGATTACATCTTCATTCCTGTAAACTTCAATCTCCACTGGAGTTTACTAGTTATATGTCATCCTGGTGATGCAGTTAATTTTAAAGATGATGATGTTTTGAAATCCCTTAGAGTACCATGTATATTGCATATGGATTCTATCAAAGGAAGTCATACAGGCCTCAAAAATATTGTTCAAAGTTACCTTTGGGAGGAGTGGAAAGAGAGGCATAAGGAAACTTCAGAAGATATATCTTCAAAATTCTTCAATTTGCGATTTGTCCCACTTGAGCTGCCGCAGCAGGAAAATTCATTTGATTGTGGTCTCTTCTTGCTCCACTTTGCGGAACTCTTTTTGGAAGATGCTCCTGATAATTTCAATCCCTTCAGGATAACAAAGTTCTGCAGCTTTCTTAATGTGAATTGGTTTCCACCTGCTGAGGCTTCTCTTAAACGCGCTCTTATCCAGAGGTTAATATTTGAACTTGTTGACCATTGTTCTCAAGAAAGTTCTCCAGCTGCTTGCAGTGGTGAGCAGCAGTCCCCTAAATTTCTTGGAGGGAGTAATGTGCATGAAACTGGGGTGGAGTTTATTACTGAGAAATATAGTTCTGTAAAAGCTTGTAATGGAAATCTATTGAGTTCCCATGTTGACCAAGGGATTGAAATTACTCTATTAACATCTTCACTGAGTTCTCAGTGTGTTAATGATTCAAGCTTGGTTTTAAGGGAGTTTTTTGAGTCTGGAGCTACCGCAGCAGGATCGTTCCTTGATGGACAGTATCAATCTTTTGACCAGTCATCATCTTTTCAGAGGCTCAAGAGTGTCATGTCACCAATAGAGGAAGAAGGAACTGGTGAACAATTTGTTTATTTACCATCATGTGAAACTGGGCTCCAAAGACTAGCCGGAATCTCACATGAAGCACGTGCCGTTCAATATTCATCCAGAGATTTTAGAGCAGATGCTTCTTGGAACCCAGGAACTTCTGTGGAGCAAGCAGGGCATGAAGAAGTTGACTCATCTCCAGAAACATCAACAGGTACTTCTGAAGATTCATTAGAAGTAGGTGTTGATAATGGTAACACAGTTAGGGACGATATGGATCCAAGTCAGATTGAAAAAACAGATGAACCAGGATCTCCATCAATGGAAAACACCGAGTGTTTTACACAGGGCCTTGCCTGTGCCTCGGGTGAGTTTCTGGAGATTTCTGCTGCTGAAAGTTCTCAAGACACTGGTAAACTGGATAATTGCAATGAGAGGGAAGCCCCTCTTCCCTCTTATGAAGAAAATCCACTAAGATTGTTCCATGAGAAATCTGATATTGAAGGCAACAGGGATATCACTTGCAAGGATGTGCAAATGATTGATCATGACCTGGAATCAGATCCAGATGAACAGCCAGCTTCAAAGAGGCTACGGCTTACACCACCACCATATGAAGGGGAAAGAAAACTCAACAGAAGCCTCTCGAAAGATCTGCATTTGTAA 2838 0.4137 MKSSSCRSFEVYDFNEEDDSAEVAAARYLGNYKTPENPNSETPAIMKYELLSCAARGDVVKAKEIDNVQWVDVDAIDNDDSGKCDISLTPSVEGEESAGKQGTAQSDCNSDEGNAPSKADTHRSFFSVLQTDDSNDAAASPGDCRLNSDLPESPPSDEQLDVTSEADESMKENTLSSPASDTAEHGASLDGQVSDDGFGNWDMQDDINMEVVVYPDYFVYRDEYCTEAVVAFSSSCIKIKGSTGYEKKGSFNFQWGLDDIIDIKSQWCGRVGVAMIQLRVISKDAVQVGSPCGTSRIEELKFAVVDSNWSVRQEKITSLHGKYKSVWNVMLDTDMDGDALGEDNFIIPNSYFPKFDDQFEEVIYPKGDSDAVSISKRDIDLLQPETFINDTIIDFYIKYLKNKIQPEERHRFHFFNSFFFRKLADLDKDPSSASEGRAAFQRVRKWTRKVDLFEKDYIFIPVNFNLHWSLLVICHPGDAVNFKDDDVLKSLRVPCILHMDSIKGSHTGLKNIVQSYLWEEWKERHKETSEDISSKFFNLRFVPLELPQQENSFDCGLFLLHFAELFLEDAPDNFNPFRITKFCSFLNVNWFPPAEASLKRALIQRLIFELVDHCSQESSPAACSGEQQSPKFLGGSNVHETGVEFITEKYSSVKACNGNLLSSHVDQGIEITLLTSSLSSQCVNDSSLVLREFFESGATAAGSFLDGQYQSFDQSSSFQRLKSVMSPIEEEGTGEQFVYLPSCETGLQRLAGISHEARAVQYSSRDFRADASWNPGTSVEQAGHEEVDSSPETSTGTSEDSLEVGVDNGNTVRDDMDPSQIEKTDEPGSPSMENTECFTQGLACASGEFLEISAAESSQDTGKLDNCNEREAPLPSYEENPLRLFHEKSDIEGNRDITCKDVQMIDHDLESDPDEQPASKRLRLTPPPYEGERKLNRSLSKDLHL* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0567 945 MobiDBLite consensus disorder prediction 926 945 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 905 945 - -
Vvi18g0567 945 Gene3D - 412 543 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 132 197 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 905 919 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 169 183 - -
Vvi18g0567 945 FunFam Probable ubiquitin-like-specific protease 2B 412 543 - -
Vvi18g0567 945 Pfam Ulp1 protease family, C-terminal catalytic domain 387 575 IPR003653 GO:0006508|GO:0008234
Vvi18g0567 945 ProSiteProfiles Ubiquitin-like protease family profile. 372 566 IPR003653 GO:0006508|GO:0008234
Vvi18g0567 945 SUPERFAMILY Cysteine proteinases 366 610 IPR038765 -
Vvi18g0567 945 Gene3D - 364 608 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 788 805 - -
Vvi18g0567 945 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 1 859 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 79 119 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 770 832 - -
Vvi18g0567 945 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0567 Vvi-Chr18 5715724 5741978 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0567 K08596 - vvi:104882498 1889