Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0560 ATGGCAGCTCTTCGACCTTCTTCTGTATCATTCGATTCTTCTGTTTCCGGACCCACTAATTCCTTCATGGGTCTTCTCCACAAATCGCCTATCTTTGATTCTCGGAAGAAATTGGTGAGAGTTGGCGAAACCCATTTGGGATCGTTACCTTCAGTCAAGAGAAATTTGGTTTCAAGATTGGAGGCTTCAAGTGATTCATTGGGATGTGGTCAACACCTTATGAGCAATAAGATGGGAAATGAAATGGAAAGTCTGGATAAAACTGATCAGGGACTGGATTTTTTTGAAGAGTTGAAGCACAGGTTTCTCTGTTTCAAGAAGCAAAAGTACCTGGAAGAACCAGAGCACTTTCAAGCTCTTGCCAAAGCTCAATCTCCAAAGTTCATGGTGATCGCTTGTGCAGACTCGAGGGTATGCCCTTCCAACATCCTTGGTTTTCAACCAGGAGAAGCATTCATGATAAGAAATGTGGCAAATCTTGTGCCCCCAGTAGAGAACGGACCATCAGAAACTAATGCTGCCCTCGAGTTTGCTGTGAATACTCTTGAAGTTGAAAATATATTAGTCATAGGACACAGTAGCTGCGCAGGAATTGAGACCCTTGTGAGGATGCGAGATGATGTGAATTCCAGTAGCTTTGTTGAAAATTGGGTTGCCAATGGGAAAGTTGCAAAATTAAGAACAAAAGCTGCTGCCGGCCATCTTGGCTTTTACCAGCAATGCAAATACTGTGAGAAGGAATCAATCAACCACTCCTTGCTGAACCTGCTAACGTATCCATGGATAGAAGACAGAGAAAGGAAAGGACTTCTTTCTATCCATGGAGGTTACTATGATTTTCTGAACTGTACATTTGAGAAGTGGACAATTGATTTCAAGAGAAGCAGCATTGAAAAAGAAGGGCCCAAATGCTTGGTCAAAAACCGAGCATTTTGGTGCTGA 942 0.4268 MAALRPSSVSFDSSVSGPTNSFMGLLHKSPIFDSRKKLVRVGETHLGSLPSVKRNLVSRLEASSDSLGCGQHLMSNKMGNEMESLDKTDQGLDFFEELKHRFLCFKKQKYLEEPEHFQALAKAQSPKFMVIACADSRVCPSNILGFQPGEAFMIRNVANLVPPVENGPSETNAALEFAVNTLEVENILVIGHSSCAGIETLVRMRDDVNSSSFVENWVANGKVAKLRTKAAAGHLGFYQQCKYCEKESINHSLLNLLTYPWIEDRERKGLLSIHGGYYDFLNCTFEKWTIDFKRSSIEKEGPKCLVKNRAFWC* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0560 313 Pfam Carbonic anhydrase 129 280 IPR001765 GO:0004089|GO:0008270
Vvi18g0560 313 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 133 140 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi18g0560 313 Gene3D Carbonic anhydrase 87 298 IPR036874 GO:0004089|GO:0008270
Vvi18g0560 313 CDD beta_CA_cladeB 101 288 IPR045066 GO:0004089|GO:0008270
Vvi18g0560 313 PANTHER CARBONIC ANHYDRASE 78 296 IPR001765 GO:0004089|GO:0008270
Vvi18g0560 313 SMART Pro_CA_2 121 289 IPR001765 GO:0004089|GO:0008270
Vvi18g0560 313 SUPERFAMILY beta-carbonic anhydrase, cab 93 294 IPR036874 GO:0004089|GO:0008270
Vvi18g0560 313 FunFam Carbonic anhydrase 90 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0560 Vvi-Chr18 5663424 5667064 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0560 K01673 - vvi:100245391 491.115