Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0557 ATGCTTGTTCCTGGGGATCTTGGGTTTTCGTGCCTGGCCCTGCTGTCGTTGTTTTTCCCCGTAATCGGATTGGTTATCCGGCACAAATGGCGGGTAGCCGTTGCGAGGAAGGAGGAAATCAAGAGGCTTTTGATTTTGGCTTCTGAGGAGGCAGCTAGGGCAGAGCTCGAAACCGCGGCAGTATCGGTCTCGCCGCAGTTCCAGTGCGCCGTCTGTTATTGCCCCACTACAACGCGGTGCGCTCGGTGCAAAGCCGTTCGTTATTGTTCTGGCAAATGTCAAATTATTCATTGGCGACAAGGTCACAAAGAAGAATGCAATCCACCTAGCATCACTCACCAGATTATCGATGAGAGTATCAGTTCTAGTCAGAAGGCGGTAAAGCAAGAAAAACATGCAATTTATGATAACAGGTTGGAGACTGAAGGGCAGCAGTGTGTGAAACCAATTGAAACATTCCTAAGCGAACCTGCATTTTCTAAACCCAATTGCTCTCCTGAAGTTTCATGTGAAGAGGACGATCACATTAAAGTTGAGTTCCTTGCAGATGGGAATGTATCAGATTCCACTTCCAAATCTTCCAGTACATCCTTTTCTGGATTCTCTACGTCCACCGACAGAGCTGAACCATCTGATAATGTTTCTGTTTCCACTACCAGTAGTGAATTATCTGATGATGTTTCTGTCAGTGAAAGTATTAATTCATATGATCCTGAAAAATCAGATGGACATAAATCTGATGATTCTGCCATGCCTGAGACAATTTCTAGTATTAACACACATCAGAATGAACCATTCTCCCCAGAGTTCACTGGTTTGGTTGATTCTGTAAATAGTTTTACTGGTTCTAGTAAATTAAATCAGATCAAATCCAGCTGTAGTGATGTTGAGACACAGTGCAGATCAAGTAGTTCTGGTTTGAGCATTAAAAGCTGCAATGAACGTTCAGTTGCCCAGCCGTCTACAGCCTCTTCTGGATTCTGGGAAGGAACTCTTGATTTGAATAGGACCAGAAATCATGCCCAGGATGATTCTGCTCAATCCTATGCCAGTGGAGCTGATAGCAATATATCTGATTCTGAATCTGTTTTACGTTTTTCTTTCAACTTGTCTGGAAGTACCATTCCTCCTTTGCATGCAGAAGTCTCCGAGAGTAAATCCACTGTGTTAGATGATGCTCATCCATCTACTCTAGGGATCAAAAAGCCTATTGAGGGAGTTGCTTCATCAGAAAAGATATCTACTCTAGGGATCAAAAAGCCTATTGAGGGAGTTGCTTCATCAGAAAAGATAAGTACAAAGGCCTTAAAGTTTAGGAACTCACCATCTTTGGCCTTTGAAAGCTCTAATCTTGTGGATAGTGGCCCTAGCAATGATTCACATAAACTGAAGTCCAGAGAAGTTAAACCCTTTTCATCTAGTGTTTCTAATGCTCATCCATCTTGTAGTACTGGAGGAGATTCAATTAGTATTGATGCTCCTAAGGCCAGGAGCTCTTCATCCTTGAGCTCTGAGAGGTCAAACCATGTTGTTAATGGCAAAAGTGGTGCCTCACATCAATTGAAATCTAGAGAAGTTGAATCTTTATCATCTGGTGCATCTGATCCTCATTTATCTTCCAGCACTGAAGGGCATTCAGTCGCAAGTATGAGATCTGGAAAGTCAACAGTTGATTCTGATTTGCATTTATCTTCTAGCACCAGAGGCCATCCAGTTCCAAATGTGAAATCTGGAAAGGTTGACGGTGTTCACACAGTGGCTGCTAGCTCCTCCCAGATTGCTAATCATTCGCCAATTGTTAGTAATGGTCTGAAAACATCTGTTCGGAAAGTTGTTGACCAATTCAGACCCTCTAAATTGTCAAAATCCCTTCCATTAGGGGTTGGGAGTGAGATTGCTGGAAGATGTAGTGACAAGGGTCTCTTTTCTTACGAAGTGTTTGTCAAGCTTTACATTTGGAACAAGGTTGAGCTGCGCCCATGTGGCCTCATGAATTGTGGGAACAGCTGTTACGCTAATGCTGTGCTCCAGTGCTTGGCATTTACTCCACCTCTTACTTCTTATTTTCTTCAAGGACTCCACTCCAAATCATGTTTAAAGAAAGAATGGTGTTTCACCTGTGAGTTTGAAAGTCTTATTTTGAAGGCAAAGGAAGGGAATTCTCCACTTTCTCCTCTTGGTATACTGTCCCAAATAAGAAATATTGGAAGTCATCTTGGTAATGGGAAAGAAGAAGATGCACATGAATTTTTAAGGTATGCTATTGATGCAATGCAATCTGTTTGTCTTAAGGAAGCTGGGGTGAATGCTTCAGGCTCTTTGGAAGAGGAAACATCTCTTATTGGCCTTACCTTTGGAGGCTACCTTCGTTCAAAGATAAAATGCATGAAGTGCCATGGTAAATCTGAGCGGCATGAGAGAATGATGGATCTTACTGTTGAGATAGAAGGAGATATAGGTACTCTGGAAGAGGCTCTTCATAAATTTACTAGCACCGAGATTCTTGATGGGGAAAACAAGTACCAATGTAGCAGATGCAAATCTTATGAGAAAGCCAAAAAGAAGTTGACAGTATCAGAGGCTCCTAATATCCTTACAATTGCATTAAAGCGATTTCAGTCGGGTAAATTTGGAAAGCTCAATAAGTCGATAAGATTTCCAGAGATCTTGGACTTGGCTCCATTTATGAGCGGGACAAGTGATAAATCACCTATATACAGGCTTTATGCAGTGGTGGTACACTTGGATATCATGAATGCTGCATTTTCTGGTCACTATGTGTGTTATGTGAAAAACATCCAGAACAAATGGTTCAAGATTGATGACAGCACGGTGAAACCCGTGGAGCTTGAAAGAGTCTTAACAAAAGGGGCATACATGCTTCTTTATGCAAGGTGCTCACCACGGGCCCCAAGATTGATAAGAAATGCAGTAATTCCTCGCAATAGAAAATTGGAAGCTGCTTCTTCCAGAAACATTGTTAAGAATACTACATTCAAGTTAAGGCACGACTCCATAGATTCAACTGCTGGCCAGTCTATGATACATTCAAAGCCCACAGCCTACCACAGTAGAAGCCCTGTGGACTGCCCCGCCAGTTTTGAATCATTTTATTCAGAAGAAACAAGGTTTCCCTGGAAGCAAAGGATTGTAGAAGCTGACTCATCAAGTGACAATTCTTCTCTTTTCACTGAAGAAGGTTCGTGCAGTACAGAGAGCAACCGGGATTCTACAAGCACGGAAGACCTTTCTGATTACATATTTGGTTATTCAGGACGTGGTTGGAGCAGCCCTTGGACAAATTCATCTGACTCTGACACTTCTTCCTCCTCTTCCTCTTTAAGGAGTTCACCCCTTGCTGAGTTGAACCGCTACTCTTCATGTTCTACCGAAACAAGTCATTCTCAAACTGATAAAGCAAAATTGGTTATGGAGGGTGATGGGTTTTGGGCAAGGCCACCCAACGGGAGTAGCAAGCTAGTGGATATGGAGGGTAAGGGAGACATTCCTTTTTTGCTATCTGACATCGCTAAACCGTGTAGAAAGTTAGTTAGTAATAGTAGTAGTGATAGTTATTGTAAGGAGACTGACAAAGAGAAAGTAGGACGGGTTAACCCTTTGGACAGCATGAAGTTGGGTGTACCTTCTAGGAGATCAACCCGGGAAAGAACAGATTAG 3678 0.425 MLVPGDLGFSCLALLSLFFPVIGLVIRHKWRVAVARKEEIKRLLILASEEAARAELETAAVSVSPQFQCAVCYCPTTTRCARCKAVRYCSGKCQIIHWRQGHKEECNPPSITHQIIDESISSSQKAVKQEKHAIYDNRLETEGQQCVKPIETFLSEPAFSKPNCSPEVSCEEDDHIKVEFLADGNVSDSTSKSSSTSFSGFSTSTDRAEPSDNVSVSTTSSELSDDVSVSESINSYDPEKSDGHKSDDSAMPETISSINTHQNEPFSPEFTGLVDSVNSFTGSSKLNQIKSSCSDVETQCRSSSSGLSIKSCNERSVAQPSTASSGFWEGTLDLNRTRNHAQDDSAQSYASGADSNISDSESVLRFSFNLSGSTIPPLHAEVSESKSTVLDDAHPSTLGIKKPIEGVASSEKISTLGIKKPIEGVASSEKISTKALKFRNSPSLAFESSNLVDSGPSNDSHKLKSREVKPFSSSVSNAHPSCSTGGDSISIDAPKARSSSSLSSERSNHVVNGKSGASHQLKSREVESLSSGASDPHLSSSTEGHSVASMRSGKSTVDSDLHLSSSTRGHPVPNVKSGKVDGVHTVAASSSQIANHSPIVSNGLKTSVRKVVDQFRPSKLSKSLPLGVGSEIAGRCSDKGLFSYEVFVKLYIWNKVELRPCGLMNCGNSCYANAVLQCLAFTPPLTSYFLQGLHSKSCLKKEWCFTCEFESLILKAKEGNSPLSPLGILSQIRNIGSHLGNGKEEDAHEFLRYAIDAMQSVCLKEAGVNASGSLEEETSLIGLTFGGYLRSKIKCMKCHGKSERHERMMDLTVEIEGDIGTLEEALHKFTSTEILDGENKYQCSRCKSYEKAKKKLTVSEAPNILTIALKRFQSGKFGKLNKSIRFPEILDLAPFMSGTSDKSPIYRLYAVVVHLDIMNAAFSGHYVCYVKNIQNKWFKIDDSTVKPVELERVLTKGAYMLLYARCSPRAPRLIRNAVIPRNRKLEAASSRNIVKNTTFKLRHDSIDSTAGQSMIHSKPTAYHSRSPVDCPASFESFYSEETRFPWKQRIVEADSSSDNSSLFTEEGSCSTESNRDSTSTEDLSDYIFGYSGRGWSSPWTNSSDSDTSSSSSSLRSSPLAELNRYSSCSTETSHSQTDKAKLVMEGDGFWARPPNGSSKLVDMEGKGDIPFLLSDIAKPCRKLVSNSSSDSYCKETDKEKVGRVNPLDSMKLGVPSRRSTRERTD* 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0557 1225 FunFam Ubiquitin carboxyl-terminal hydrolase 15 655 974 - -
Vvi18g0557 1225 ProSitePatterns Zinc finger MYND-type signature. 69 106 IPR002893 -
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 447 579 - -
Vvi18g0557 1225 Coils Coil 37 57 - -
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 185 253 - -
Vvi18g0557 1225 Pfam Ubiquitin carboxyl-terminal hydrolase 661 963 IPR001394 GO:0004843|GO:0016579
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 185 236 - -
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 469 572 - -
Vvi18g0557 1225 CDD Peptidase_C19E 660 964 - -
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 1184 1225 - -
Vvi18g0557 1225 SUPERFAMILY HIT/MYND zinc finger-like 66 108 - -
Vvi18g0557 1225 ProSiteProfiles Zinc finger MYND-type profile. 69 106 IPR002893 -
Vvi18g0557 1225 SUPERFAMILY Cysteine proteinases 657 969 IPR038765 -
Vvi18g0557 1225 Pfam MYND finger 69 106 IPR002893 -
Vvi18g0557 1225 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 662 677 IPR018200 GO:0004843|GO:0006511
Vvi18g0557 1225 Gene3D Cysteine proteinases 654 974 - -
Vvi18g0557 1225 Gene3D - 55 110 - -
Vvi18g0557 1225 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 389 969 - -
Vvi18g0557 1225 MobiDBLite consensus disorder prediction 1057 1080 - -
Vvi18g0557 1225 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 661 966 IPR028889 -
Vvi18g0557 1225 FunFam Ubiquitin carboxyl-terminal hydrolase 15 60 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0557 Vvi-Chr18 5634591 5644026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0557 641 995 Miscellaneous Gene Families AT4G31670 51.124 5.79e-130 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0557 K11855 - vvi:100257420 2342.77