Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0556 ATGTCGGGAAACCTACAGCGTGTGATCGTCGCCGTCGATGGCAGCGAGGAAAGCATGAAAGCCTTGAGGTGGGCGCTTGATAATATCAAGCTTCGATCGCCTCCCTCCCATGCCGAAGCCGGCTCCTTCGTCATCCTACATGTTCAATCCCCGCCCTCCATCGCTACCGGTCTCAATCCCGGTGCCATCCCCTTCGGCGGTCCCACTGATTTGGAGGTGCCTGCATTCACTGCGGCGATTGAGGCGCATCAGCGGCGCATTACTGAGGCCATACTTGATCACGCTTTGAAGATTTGTTCTGATAAGAATGTGAATGTCAAAACCGATGTGGTGATTGGGGATCCGAAGGAGAAGATTTGTGAAGCTGCTGTGAATTTGCATGCTGATCTGCTTGTCATGGGGTCACGTGCTTTTGGACCCATTAGAAGGATGTTTTTGGGAAGTGTCAGCAACTATTGCACCAACCATGCACAATGTCCTGTGATGATAGTTAAGGATACTGCCTGA 507 0.5168 MSGNLQRVIVAVDGSEESMKALRWALDNIKLRSPPSHAEAGSFVILHVQSPPSIATGLNPGAIPFGGPTDLEVPAFTAAIEAHQRRITEAILDHALKICSDKNVNVKTDVVIGDPKEKICEAAVNLHADLLVMGSRAFGPIRRMFLGSVSNYCTNHAQCPVMIVKDTA* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0556 168 CDD USP_Like 7 164 - -
Vvi18g0556 168 PRINTS Universal stress protein signature 143 165 IPR006015 -
Vvi18g0556 168 PRINTS Universal stress protein signature 125 137 IPR006015 -
Vvi18g0556 168 PRINTS Universal stress protein signature 5 23 IPR006015 -
Vvi18g0556 168 Gene3D HUPs 1 168 IPR014729 -
Vvi18g0556 168 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 7 165 - -
Vvi18g0556 168 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 166 - -
Vvi18g0556 168 Pfam Universal stress protein family 6 165 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0556 Vvi-Chr18 5624206 5628202 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0556 - - vvi:100250647 337.806